View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2512_low_10 (Length: 562)

Name: NF2512_low_10
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2512_low_10
NF2512_low_10
[»] chr3 (10 HSPs)
chr3 (1-453)||(28916945-28917398)
chr3 (201-452)||(28926409-28926661)
chr3 (201-437)||(28903376-28903613)
chr3 (223-451)||(28893394-28893622)
chr3 (211-452)||(28936622-28936865)
chr3 (17-156)||(28926196-28926336)
chr3 (14-156)||(28902543-28902686)
chr3 (98-156)||(28935823-28935881)
chr3 (78-156)||(28892663-28892741)
chr3 (518-550)||(28917463-28917495)
[»] chr5 (1 HSPs)
chr5 (14-54)||(34009591-34009631)


Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 28916945 - 28917398
Alignment:
Q  1 gtcaagcttgatgtttccatttttaatgatgtcacgggcaatataaacatcctgagaattccacccttccnnnnnnn-gataacttgataatattctaaa 99  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  28916945 gtcacgcttgatgtttccatttttaatgatgtcacgggcaatataaacatcctgagaattccacccttccttttttttgataacttgataatattctaaa 28917044  T
Q  100 aagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaatcacataattataaaacatatggagagagagggagagaaagtg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28917045 aagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaatcacataattataaaacatatggagagagagggagagaaagtg 28917144  T
Q  200 gtaatacaaggcatgattgaaacaaatatctaaccccatcagaatcaatctccgcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaa 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  28917145 gtaatacaaggcatgattgaaacaaatatctaaccccatcagaatcaatgtcagcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaa 28917244  T
Q  300 tcctttggttgttttgacagtagcaaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagcacctaaacttcgatgctctaccg 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28917245 tcctttggttgttttgacagtagcaaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagcacctaaacttcgatgctctaccg 28917344  T
Q  400 caaaggtagcaaaaatgggaacctataaaattattcaaaagtcattcggcatcc 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28917345 caaaggtagcaaaaatgggaacctataaaattattcaaaagtcattcggcatcc 28917398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 201 - 452
Target Start/End: Original strand, 28926409 - 28926661
Alignment:
Q  201 taatacaaggcatgattgaaacaaatatctaaccccatcagaatcaatctccgcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaat 300  Q
    ||||| ||||||||||||||| ||| |||| ||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28926409 taatataaggcatgattgaaaaaaacatctcaccccatcagaatcaacatcagcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaat 28926508  T
Q  301 cctttggttgttttgacagtagcaaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagcacctaaacttcgatgctctaccgc 400  Q
    |||||| || |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  28926509 cctttgtttcttttgacagtggcaaattcagcatcatagaagcatcttccacaaacagctattgggcaacacaagcacataaacttcgatgctctaccgc 28926608  T
Q  401 aaaggtagcaaaaatgggaacctat-aaaattattcaaaagtcattcggcatc 452  Q
    ||||||||||| ||||||||||||| ||||||||||||||| ||||| |||||    
T  28926609 aaaggtagcaataatgggaacctataaaaattattcaaaagccattcagcatc 28926661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 201 - 437
Target Start/End: Original strand, 28903376 - 28903613
Alignment:
Q  201 taatacaaggcatgattgaaacaaatatctaaccccatcagaatcaatctccgcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaat 300  Q
    ||||| ||||| ||||| ||| ||| |||| |||||||||||||| |  || |||||| ||||||||||||| |||||||||||||||||||||||||||    
T  28903376 taatataaggcgtgattaaaaaaaaaatcttaccccatcagaatctacgtcagcatttttctcaattagaaaggcaagttttgagcagtgcctacaaaat 28903475  T
Q  301 cctttggttgttttgacagtagcaaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagcacctaaacttcgatgctctaccgc 400  Q
    |||||| ||  |||||||  ||||||||||||| ||||||||||||||||||||| |||||||| |||||| |||||| ||||||| |||  || |||||    
T  28903476 cctttgtttcctttgacaagagcaaattcagcaccatagaagcattttccacaaaaagctattgtgcaacacaagcacataaactttgatattccaccgc 28903575  T
Q  401 aaaggtagcaaaaatgggaacctat-aaaattattcaa 437  Q
    |  |||||||| |||||||| |||| ||||||||||||    
T  28903576 attggtagcaagaatgggaagctataaaaattattcaa 28903613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 223 - 451
Target Start/End: Original strand, 28893394 - 28893622
Alignment:
Q  223 aaatatctaaccccatcagaatcaatctccgcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaatcctttggttgttttgacagtag 322  Q
    |||||||| |||||||||||||| |  ||  ||||| ||||||||| | | |||||||||||||||||||||||||||||| || || ||||||||  ||    
T  28893394 aaatatcttaccccatcagaatcgacatcaacatttttctcaattaaataggcaagttttgagcagtgcctacaaaatcctctgtttcttttgacaagag 28893493  T
Q  323 caaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagcacctaaacttcgatgctctaccgcaaaggtagcaaaaatgggaacc 422  Q
    ||||||||||| ||| ||||||||||| ||||| |||||||||||| || |||||| ||||||||||||||| |  |||   ||  ||| ||||||||||    
T  28893494 caaattcagcaccatggaagcattttctacaaaaagctattgggcagcacaagcacataaacttcgatgctccatggcatccgttacaataatgggaacc 28893593  T
Q  423 tataaaattattcaaaagtcattcggcat 451  Q
    |||||||||||||||||||||||| ||||    
T  28893594 tataaaattattcaaaagtcattcagcat 28893622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 211 - 452
Target Start/End: Original strand, 28936622 - 28936865
Alignment:
Q  211 catgattgaaacaaatatctaaccccatcagaatcaatctccgcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaatcctttggttg 310  Q
    |||| ||||||  ||||||| |||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||||||| ||||||||||||| ||     
T  28936622 catgtttgaaaggaatatcttaccccatcagaatcaacctcagcattttcctcaattagaaatgcaagttttgagcagtgcccacaaaatcctttgtttc 28936721  T
Q  311 ttttgacagtagcaaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagcacctaaacttcgatgctctaccgcaaaggtagca 410  Q
     ||||||| |||||||| ||||| | | | |||| ||||||||||||||| ||||||| || |||||| ||||||||| |  ||||| ||| | ||||||    
T  28936722 gtttgacattagcaaatacagcaccctggtagcaatttccacaaacagcttttgggcagcacaagcacataaacttcggttttctacggcatatgtagca 28936821  T
Q  411 aaaatgggaacc--tataaaattattcaaaagtcattcggcatc 452  Q
    | | ||||||||  ||||||||||||||||| | |||| |||||    
T  28936822 atagtgggaacctatataaaattattcaaaatttattcagcatc 28936865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 28926196 - 28926336
Alignment:
Q  17 ccatttttaatgatgtcacgggcaatataaacatcctgagaattccacccttc-cnnnnnnngataacttgataatattctaaaaagtaactttcaactg 115  Q
    |||||||||| ||||||||||||||| |||| |||||||||||||  |||||| |       ||||||||||||||||||||||||||||||||||||||    
T  28926196 ccatttttaacgatgtcacgggcaatgtaaatatcctgagaattcagcccttctctttctttgataacttgataatattctaaaaagtaactttcaactg 28926295  T
Q  116 tatctggatctctcatatctatcttctcctgcaaatgaaaa 156  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28926296 tatctggatctctcatatctatcttctcctgcaaatgaaaa 28926336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 28902543 - 28902686
Alignment:
Q  14 tttccatttttaatgatgtcacgggcaatataaacatcctgagaattccacccttccnnnnnnn-gataacttgataatattctaaaaagtaactttcaa 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||         |||||||||||||||||| |||||||||||||| |    
T  28902543 tttccatttttaatgatgtcacgggcagtataaacatcctgagaattcagcccttcttttttcttgataacttgataatattcaaaaaagtaactttcta 28902642  T
Q  113 ctgtatctggatctctcatatctatcttctcctgcaaatgaaaa 156  Q
     ||||||||||||||||||||||| |||||||||||||||||||    
T  28902643 ttgtatctggatctctcatatctaccttctcctgcaaatgaaaa 28902686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 28935823 - 28935881
Alignment:
Q  98 aaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaa 156  Q
    ||||||||||||||| ||||||||||||| ||||||||||||| ||||| |||||||||    
T  28935823 aaaagtaactttcaaatgtatctggatctttcatatctatcttttcctgaaaatgaaaa 28935881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 28892663 - 28892741
Alignment:
Q  78 gataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaa 156  Q
    ||||| ||||||||| || ||||||||||||||   ||||||||||||| ||||||| | ||| |||||||||||||||    
T  28892663 gataatttgataataatcaaaaaagtaactttcttgtgtatctggatctttcatatcgaccttttcctgcaaatgaaaa 28892741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 518 - 550
Target Start/End: Original strand, 28917463 - 28917495
Alignment:
Q  518 gaatgaatttaatcacaacaacctacacaggtt 550  Q
    |||||||||||||||||||||||||||||||||    
T  28917463 gaatgaatttaatcacaacaacctacacaggtt 28917495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 34009591 - 34009631
Alignment:
Q  14 tttccatttttaatgatgtcacgggcaatataaacatcctg 54  Q
    |||| ||| ||||||||||||||||||||||||||||||||    
T  34009591 tttcaattgttaatgatgtcacgggcaatataaacatcctg 34009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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