View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_low_11 (Length: 557)
Name: NF2512_low_11
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 16 - 541
Target Start/End: Original strand, 44260442 - 44260945
Alignment:
| Q |
16 |
atgcaacaaattgaaactaacaccttggatatatgtgagatgattgatttttctgatcttggtgattttcctcctagttcaccattaaaccaacttaatg |
115 |
Q |
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| T |
44260442 |
atgcaacaaattgaaactaacaccttggatatatgtgagatgattgatttttctgatcttggtgattttcctcctagttcaccattaaaccaacttaatg |
44260541 |
T |
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| Q |
116 |
ggcttgtggagatgaatgaccaagtagttaatcctggttatacaagtgagatggtggatttcacaagtcttggtgatttgcctcctaattcatcatcaaa |
215 |
Q |
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| T |
44260542 |
ggcttgtggagatgaatgaccaagtagttaatcctgattatacaagtgagattgtggatttcacaagtcttggtgatttgcctcctaattcatcatcaaa |
44260641 |
T |
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| Q |
216 |
ccaacttagtcaacatgttgatcttaatgacttgataaatcaactggatgatggtgttttgtgctgggattgtcaacctgatgagtttgtttggaaagat |
315 |
Q |
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| T |
44260642 |
ccaacttagtcaacatgttaatcttaatgactgg---aatcaactagatgatggtgttttgtgctgggattgtcaacctgatgagtttgtttggaaagat |
44260738 |
T |
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| Q |
316 |
ctttctttttaatctcaaaaagaagagggtggtgcaagttttgatggtttgaaactagcttcttgtttgtattttgttctgactatgtctagagaaattg |
415 |
Q |
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| T |
44260739 |
ctttctttttaatctcaaaaagaagagggtggtgcaagttttgatggtttgaaactagcttcttgtttgtattttgttctgactatgtctagagaaattg |
44260838 |
T |
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| Q |
416 |
catttatattgacttgagtttaagttttctatgtttgtgttttgaacttggttttatgttcatgtttagttggttaatttaagtttgtgtcaggtattca |
515 |
Q |
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| T |
44260839 |
catttatattgacttgagtttaagttttctatgtttg-------------------tgttcatgtttagttggttaatttaagtttgtgtcaggtattca |
44260919 |
T |
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| Q |
516 |
tttgatccatcaacagcacatataat |
541 |
Q |
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| T |
44260920 |
tttgatccatcaacagcacatataat |
44260945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 160 - 355
Target Start/End: Original strand, 15978278 - 15978473
Alignment:
| Q |
160 |
agtgagatggtggatttcacaagtcttggtgatttgcctcctaattcatcatcaaaccaacttagtcaacatgttgatcttaatgacttgataaatcaac |
259 |
Q |
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| T |
15978278 |
agtgagatgattgatttcactaatcttggtgatttgcatcctagttcatctacaaagcaacttagtcaacttgatgattctgacgattggttaaatcaac |
15978377 |
T |
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| Q |
260 |
tggatgatggtgttttgtgctgggattgtcaacctgatgagtttgtttggaaagatctttctttttaatctcaaaaagaagagggtggtgcaagtt |
355 |
Q |
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| T |
15978378 |
tagatggtggtgttttgaatcaggttagtcagcctcatcagtttttctggaaagatctttctttttcatctcaaagtgaaaagggcgatgcaagtt |
15978473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 263 - 334
Target Start/End: Original strand, 15978546 - 15978617
Alignment:
| Q |
263 |
atgatggtgttttgtgctgggattgtcaacctgatgagtttgtttggaaagatctttctttttaatctcaaa |
334 |
Q |
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| T |
15978546 |
atgatggtgttttgaactgggctaatcaacctgatcagtttgcatggaaagatctttctttttcatctcaaa |
15978617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 15978208 - 15978268
Alignment:
| Q |
162 |
tgagatggtggatttcacaagtcttggtgatttgcctcctaattcatcatcaaaccaactt |
222 |
Q |
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| T |
15978208 |
tgagatggtggatttgactaatcatgttgatttgcctcataattcatcaacaaaccaactt |
15978268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 445
Target Start/End: Complemental strand, 16053615 - 16053556
Alignment:
| Q |
385 |
tattttgttctgactatgtctagagaaattgcatttatattgacttgagtttaagttttct |
445 |
Q |
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| T |
16053615 |
tattttgttc-gactatgtctagagaaactgcattaatattgattagatttaaagttttct |
16053556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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