View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_low_13 (Length: 517)
Name: NF2512_low_13
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 8 - 517
Target Start/End: Complemental strand, 42193802 - 42193292
Alignment:
| Q |
8 |
catcatcatatctctaaaaaattaccatgcaaatctactaatcttttaaggtaaaatatcaaccatgattttaatgtttccaacattannnnnnngcatg |
107 |
Q |
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| T |
42193802 |
catcatcatatctctaaaaaattaccatgcaaatctactaatcttttaaggtaaaatatcaaccatgattttaatatttccaacatttttttttttcatg |
42193703 |
T |
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| Q |
108 |
aaatatcttgtgcaacttttttatagagttgagtttattttcttatttaatttaaaattgaagttgaatgaacaattaaaatgtacactcgagctgtgat |
207 |
Q |
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| T |
42193702 |
aaatatcttgtgcaactttttgatagagttgagtttattttcttatttaatttaaaattgaagttgaatgaacaattaaaatgtacactcgagctgtgat |
42193603 |
T |
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| Q |
208 |
caaatacacacaagttgtaatgaaattatttggaaaagatagattttgtgcatggtatcactatgtttgtcagaatcagagtcaatcacacttcgatttt |
307 |
Q |
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| T |
42193602 |
caaatacacacaagttgtaatgaaattatttggaaaagatagattttgtgcatggtatcactatgtttgtcagaatcagagtcaatcacacttcgatttt |
42193503 |
T |
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| Q |
308 |
aaaaaacactcatcgtaattctagcaaaatcactgttaaatcaaacaatcaaacatgcatatcttttggcacaacatcttttcaattgtactgcttatga |
407 |
Q |
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| T |
42193502 |
caaaaacactcatcgtaattctagcaaaatcactgttaaatcaaacaatcaaacatgcatatcttttggtacaacatcttttcaattgtactgcttatga |
42193403 |
T |
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| Q |
408 |
tacccaatccttttcaaattgtcaaaagaagtttcacttcattagaaaatcctcaatctt--ttttcagcacaaccttttattattaattatttaacatt |
505 |
Q |
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| T |
42193402 |
tacccaatccttttcaaattgtcaaaagaagtttcacttcattagaaaatcctcaatcttttttttcagcacaacc-tttattattaattatttaacatt |
42193304 |
T |
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| Q |
506 |
tgaaaatgaacc |
517 |
Q |
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| T |
42193303 |
tgaaaataaacc |
42193292 |
T |
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