View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_low_17 (Length: 461)
Name: NF2512_low_17
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 15 - 443
Target Start/End: Complemental strand, 30194330 - 30193902
Alignment:
| Q |
15 |
atatacatctggagcaataccaaaccactccatctttctcattaaatcaattgcaagatcacaatgccctaactgattataacaagaaatcaaaatattc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30194330 |
atatacatctggagcaataccaaaccactccatctttctcattaaatcaattgcaagatcacaatgccctaactgattataacaagaaatcaaaatattc |
30194231 |
T |
|
| Q |
115 |
caagttaccaaactaggttcaactccatctttctgcatagcatcaaaatacttctgagcttgtccaatctcaccattctgacaaaacccagatatcatcg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30194230 |
caagttaccaaactaggttcaactccatctttctgcatagcatcaaaatacttctgagcttgtccaatctcaccattctgacaaaacccagatatcatcg |
30194131 |
T |
|
| Q |
215 |
cattccacgcaacactatccctctcatccatacaatcaaaaatcttcttcgcacaatccatctccccacacttagcatacacagccataatcgaattacg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30194130 |
cattccacgcaacactatccctctcatccatacaatcaaaaatcttcttcgcacaatccatctccccacacttagcatacacagccataatcgaattacg |
30194031 |
T |
|
| Q |
315 |
caaatgcttcgaccaccgcattccacgtctaatcaccatcgaatgtatcaacctcccagtctccaaatccctacacttcccacacgcctgcaaaaccttc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30194030 |
caaatgcttcgaccaccgcattccacgtctaatcaccatcgaatgtatcaacctcccagtctccaaatccctacacttcccacacgcctgcaaaaccttc |
30193931 |
T |
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| Q |
415 |
ggaagcaaaaactcatccggcaaaacacc |
443 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
30193930 |
ggaagcaaaaactcatccggcaaaacacc |
30193902 |
T |
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