View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_low_19 (Length: 428)
Name: NF2512_low_19
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 13 - 231
Target Start/End: Complemental strand, 1430902 - 1430688
Alignment:
| Q |
13 |
aatatatgtttgttacggcacacaatatataataagtcctcgtaggctagcccttgaacaatatttatctaccgaaagctctctctttatactttataac |
112 |
Q |
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| T |
1430902 |
aatatatgtttgttacggcacacagtatataa---gtcctcgtaggctagcccttgaacaatatttatctaccgaaagctctctctcta--cttaataac |
1430808 |
T |
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| Q |
113 |
aagaattctaaaagaa-tggaagatcatcaagtaattattcctctgatgggagaatttaattgctctgatccaatcacaaggtactccatcccttttact |
211 |
Q |
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| T |
1430807 |
aagaattctaaaaaaaatggaagatcatcaagtaattattcctctgatgggagaatttaattgctctgatccaatcacaaggtactccatcccttttact |
1430708 |
T |
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| Q |
212 |
ttttcctcctataattttat |
231 |
Q |
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|||||||||||||||||||| |
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| T |
1430707 |
ttttcctcctataattttat |
1430688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 226 - 410
Target Start/End: Complemental strand, 1430463 - 1430277
Alignment:
| Q |
226 |
ttttatttattttcaattcgtatgtatctta----tgaacgtatattttgtttacagcgattgtgaaaaagacatgaaagaagtgattgtgatagaag-a |
320 |
Q |
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| T |
1430463 |
ttttatttattttcaattcgtatgtatcttaattatgaacgtatattttgtttacagcgattgtgaaaaagacatgaaagaagtgattgtgatagaagaa |
1430364 |
T |
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| Q |
321 |
tctccctcaaggtattcaatccctttaatttaccc-tcacacaattctactattcttttgtacgtgcttttaatctcatgaacaaaccaat |
410 |
Q |
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| T |
1430363 |
tctccctcaaggtattcaatccctttaatttacccttcacacaattctactattctttt----gtgctttgaatctcatgaacaaaccaat |
1430277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 372
Target Start/End: Original strand, 1462726 - 1462816
Alignment:
| Q |
283 |
tgtgaaaaagacatgaaagaagtgattgtgatagaaga-tctccctcaaggtattcaatccctttaatttaccctcacacaattctactat |
372 |
Q |
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| T |
1462726 |
tgtgaaaaatgcatgaaagaagtgattgtgatggaagaatctattcaaaggtactcaatccctttaatttaccatcacacaattctactat |
1462816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 1462550 - 1462606
Alignment:
| Q |
130 |
ggaagatcatcaagtaattattcctctgatgggagaatttaattgctctgatccaat |
186 |
Q |
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| T |
1462550 |
ggaagataatcaagtaattattcctctgatgggagaatccaatcgctctgaaccaat |
1462606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 365
Target Start/End: Complemental strand, 1456397 - 1456368
Alignment:
| Q |
336 |
tcaatccctttaatttaccctcacacaatt |
365 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1456397 |
tcaatccctttaatttaccctcacacaatt |
1456368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 365
Target Start/End: Original strand, 1566940 - 1566969
Alignment:
| Q |
336 |
tcaatccctttaatttaccctcacacaatt |
365 |
Q |
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| T |
1566940 |
tcaatccctttaatttaccctcacacaatt |
1566969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 379
Target Start/End: Complemental strand, 1754523 - 1754473
Alignment:
| Q |
329 |
aaggtattcaatccctttaatttaccctcacacaattctactattcttttg |
379 |
Q |
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|||||| |||||||||||| |||||||| ||||| |||||||||||||||| |
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| T |
1754523 |
aaggtactcaatccctttagtttaccctaacacagttctactattcttttg |
1754473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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