View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_low_20 (Length: 419)
Name: NF2512_low_20
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 20 - 409
Target Start/End: Original strand, 3561507 - 3561896
Alignment:
| Q |
20 |
caagagtcataatagctccacctgtttggaagataagtgctgctaaaccaatggtccattttctgccgatccaatccgatgtttttccgccagctaaact |
119 |
Q |
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| T |
3561507 |
caagagtcataatagctccacctgtttggaagataagtgctgctaaaccaatggtccattttctgccgatccaatccgatgtttttccgccagctaaact |
3561606 |
T |
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| Q |
120 |
acccaaaagtgatattatgctcaaaattccaacaagtacttcttgttgaacctctgttatcttcaaatcctcctgaatgaatataattgctccactcata |
219 |
Q |
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| T |
3561607 |
acccaaaagtgatattatgctcaaaattccaacaagtacttcttgttgaacctctgttatcttcaaatccccctgaatgaatataattgctccactcata |
3561706 |
T |
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| Q |
220 |
acaccaacgtctgcaaaatgaaaagcaaagatggcaagcggcttaattttgaacttcattgatggtataaatgaatacacgccagcgatgtttatgtagt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3561707 |
acaccaacgtctgcaaaatgaaaagcaaagatggcaagtggcttaattttgaacttcattgatggtataaatgaatacacgccagcgatgtttatgtagt |
3561806 |
T |
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| Q |
320 |
gattatcataaaataacttggtacaacatggttgcaaacaagaaaccaatgggttctggcctatagactaccagatttaagtcacctatg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3561807 |
gattatcataaaataacttggtacaacatggttgcaaacaagaaaccaatgggttctggcctatagactaccagatttaagttacctatg |
3561896 |
T |
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