View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_low_24 (Length: 391)
Name: NF2512_low_24
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 10 - 375
Target Start/End: Original strand, 41113155 - 41113521
Alignment:
| Q |
10 |
attatactatttaagaatatcttacagagaatcaaaataagtgcgttcattatctgacattaactgatagattacaatttt-tgcagagtaagtttctgg |
108 |
Q |
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| T |
41113155 |
attatactttttaagaatatcttacagagaatcaaaataagtgcgttcattatctgacattaactgatagattacaattttttgcagagtaagtttctgg |
41113254 |
T |
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| Q |
109 |
gtgccaacttttaatgtttgttaaaaggctaatgaatgtctgttttacttgatttagattttatcgacatctttctgggcaggctttgctgtttagtacc |
208 |
Q |
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| T |
41113255 |
gtgccaacttttaatgtttgttaaaaggctaatgaatgtctcttttacttgatttagattttatcgacatctttctgggcaggctttgttgtttagtacc |
41113354 |
T |
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| Q |
209 |
ttattttgttatgaattgtttatgaaaatgccaccttgttgtgtctcggttctccctctaaagagaagctccgtctttcaaagttcttttctctaatatc |
308 |
Q |
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| T |
41113355 |
ttattttgttatgaattgtttatgaaaatgccaccttgttgtgtctcggttctccctctaaagagaagctccgtctttcaaagttcttttctctaatatc |
41113454 |
T |
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| Q |
309 |
ttattattctgttgcagatttcaccttactttggtccttacatcaacaatatgctgctggatgatgt |
375 |
Q |
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| T |
41113455 |
ttattattctgttgcagatttcaccttactttggtccttacatcaacaatatgctgctggatgatgt |
41113521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 375
Target Start/End: Complemental strand, 21862029 - 21861974
Alignment:
| Q |
320 |
ttgcagatttcaccttactttggtccttacatcaacaatatgctgctggatgatgt |
375 |
Q |
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| T |
21862029 |
ttgcagatttcacctaactctggtcattactgcgacaatatgctgctggatgatgt |
21861974 |
T |
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