View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_low_25 (Length: 374)
Name: NF2512_low_25
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 373
Target Start/End: Original strand, 30882553 - 30882912
Alignment:
| Q |
15 |
actgctattttctgcgattcactattgaccacactgataaaacgccacagctctgctattcttgaaaaatttgctgtggtggttgtnnnnnnnttctcca |
114 |
Q |
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| T |
30882553 |
actgctattttctgcgattcgctattgaccacactgataaaacgccacagctctgctattcttgaaaaatttgctgtggtggttgtaaaaaaattctcca |
30882652 |
T |
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| Q |
115 |
ccgcgatatgcaatggtgccgtcatggctacatattagagtttgcatagacacctctaagattaggtgtgtcgcggtgtcggacacacatcggtgtctga |
214 |
Q |
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| T |
30882653 |
ccgcaatatgcaatggtgccgtcatggctacatattagagtttgcatagacacctctaagattaggcgtgtcgcggtgtcggacacacatcggtgtctga |
30882752 |
T |
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| Q |
215 |
cactcgtacgacgcatgttggactaactcaaatcggtgtcccaaaaattag-nnnnnnnncgtctatgcttcgacacttcttgaatcggggtctgacacc |
313 |
Q |
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| T |
30882753 |
cactcgtacgacacatgttggactaactcaaatccgtgtcccaaaaattagttttttcttcttctttgcttcgacacttcttgaatcggggtctgacacc |
30882852 |
T |
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| Q |
314 |
tgtttgacactcatacatcacgtgtcggacaactcggacaagtgtcccaagttgttttct |
373 |
Q |
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| T |
30882853 |
tgtttgacactcatacatcacgtgtcggacaactcggacaagtgtcccaatttgttttct |
30882912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 17831481 - 17831529
Alignment:
| Q |
170 |
ctaagattaggtgtgtcgcggtgtcggacacacatcggtgtctgacact |
218 |
Q |
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| T |
17831481 |
ctaagattaggcgtgtcccggtgtcggacacatgtcggtgtccgacact |
17831529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 362
Target Start/End: Original strand, 32706006 - 32706088
Alignment:
| Q |
280 |
tgcttcgacacttcttgaatcggggtctgacacctgtttgacactcatacatcacgtgtcggacaactcggacaagtgtccca |
362 |
Q |
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| T |
32706006 |
tgcttcgacacttgttggatcgttgtccgacacctgtatgatactcatacaacacatgttggacaactcggacaagtgtccca |
32706088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 879842 - 879894
Alignment:
| Q |
174 |
gattaggtgtgtcgcggtgtcggacacacatcggtgtctgacactcgtacgac |
226 |
Q |
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| T |
879842 |
gattaggtgtgtcgcagtgtccgacacatgttggtgtttgacactcgtacgac |
879894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 372
Target Start/End: Complemental strand, 35530389 - 35530297
Alignment:
| Q |
280 |
tgcttcgacacttcttgaatcggggtctgacacctgtttgacactcatacatcacgtgtcggacaactcggacaagtgtcccaagttgttttc |
372 |
Q |
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| T |
35530389 |
tgcttcaacactccttgggtcggtgtcctacacctatatgacacttatacaacacgtgtcggacaactcggacaagtgtcccaattttttttc |
35530297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 362
Target Start/End: Original strand, 30955361 - 30955439
Alignment:
| Q |
284 |
tcgacacttcttgaatcggggtctgacacctgtttgacactcatacatcacgtgtcggacaactcggacaagtgtccca |
362 |
Q |
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| T |
30955361 |
tcgacacttcttgggtcggtgtctgacacttgtatgacactcataccacacatgtcgaacaactcgaacaagtgtccca |
30955439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 5938575 - 5938531
Alignment:
| Q |
173 |
agattaggtgtgtcgcggtgtcggacacacatcggtgtctgacac |
217 |
Q |
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| T |
5938575 |
agattaggtgtgttccggtgtcggacacgcatcggtgtctgacac |
5938531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 2419963 - 2419920
Alignment:
| Q |
174 |
gattaggtgtgtcgcggtgtcggacacacatcggtgtctgacac |
217 |
Q |
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| T |
2419963 |
gattaggtgtgtcccggggtcggacacgcatcggtgtctgacac |
2419920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 41849408 - 41849352
Alignment:
| Q |
163 |
gacacctctaagattaggtgtgtcgcggtgtcggacacacatcggtgtctgacactc |
219 |
Q |
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| T |
41849408 |
gacacctctagaattaggcgtgtcgcggtgtcagacacgcgtcggtgtccgacactc |
41849352 |
T |
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