View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2512_low_28 (Length: 353)

Name: NF2512_low_28
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2512_low_28
NF2512_low_28
[»] chr4 (8 HSPs)
chr4 (235-337)||(24126563-24126665)
chr4 (235-328)||(24685392-24685485)
chr4 (1-60)||(24126332-24126391)
chr4 (4-60)||(24685161-24685217)
chr4 (1-58)||(12861545-12861602)
chr4 (1-49)||(47376666-47376714)
chr4 (1-60)||(44355272-44355331)
chr4 (1-59)||(6657613-6657671)
[»] scaffold0471 (2 HSPs)
scaffold0471 (235-337)||(11167-11268)
scaffold0471 (1-60)||(10920-10979)
[»] chr6 (3 HSPs)
chr6 (235-337)||(9306729-9306831)
chr6 (1-58)||(35223266-35223323)
chr6 (5-59)||(9307004-9307058)
[»] chr2 (2 HSPs)
chr2 (235-337)||(25649586-25649688)
chr2 (1-60)||(25649863-25649922)
[»] chr7 (3 HSPs)
chr7 (235-328)||(15814759-15814852)
chr7 (1-52)||(15814568-15814619)
chr7 (1-60)||(23456539-23456598)
[»] chr1 (2 HSPs)
chr1 (235-328)||(49384089-49384182)
chr1 (1-60)||(49384360-49384419)


Alignment Details
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 24126563 - 24126665
Alignment:
Q  235 attcaacaaaaaccaacaataaacctcatccacacatataattctcaaaccaaaaagcacactagtttatcatttttatcaaaataaaacccaccaaaca 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  24126563 attcaacaaaaaccaacaataaacctcatccacacatataattctcaaaccaaaaaacacactagtttatcatttttatcaaaataaaacccactaaaca 24126662  T
Q  335 cac 337  Q
    |||    
T  24126663 cac 24126665  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 235 - 328
Target Start/End: Original strand, 24685392 - 24685485
Alignment:
Q  235 attcaacaaaaaccaacaataaacctcatccacacatataattctcaaaccaaaaagcacactagtttatcatttttatcaaaataaaacccac 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24685392 attcaacaaaaaccaacaataaacctcatccacacatataattctcaaaccaaaaaacacactagtttatcatttttatcaaaataaaacccac 24685485  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 24126332 - 24126391
Alignment:
Q  1 aattagcttaggtggcacgctgactgtgtattgatcaatgaagtggcactttaacttggc 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24126332 aattagcttaggtggcacgctgactgtgtattgatcaatgaagtggcactttgacttggc 24126391  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 24685161 - 24685217
Alignment:
Q  4 tagcttaggtggcacgctgactgtgtattgatcaatgaagtggcactttaacttggc 60  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  24685161 tagcttaggtggcacgctgactatgtattgatcaatgaagtggcactttgacttggc 24685217  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12861545 - 12861602
Alignment:
Q  1 aattagcttaggtggcacgctgactgtgtattgatcaatgaagtggcactttaacttg 58  Q
    |||||||||||||||| ||||||||||| || ||||||||| |||||||||| |||||    
T  12861545 aattagcttaggtggcgcgctgactgtgcatcgatcaatgaggtggcactttgacttg 12861602  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47376666 - 47376714
Alignment:
Q  1 aattagcttaggtggcacgctgactgtgtattgatcaatgaagtggcac 49  Q
    |||||||||| |||||||||| |||||| |||||||||||| |||||||    
T  47376666 aattagcttatgtggcacgcttactgtgcattgatcaatgaggtggcac 47376714  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 44355331 - 44355272
Alignment:
Q  1 aattagcttaggtggcacgctgactgtgtattgatcaatgaagtggcactttaacttggc 60  Q
    ||||||||||||||||| ||| | |||| |||||||||||| || ||||||| |||||||    
T  44355331 aattagcttaggtggcatgcttattgtgcattgatcaatgaggtagcactttgacttggc 44355272  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 6657613 - 6657671
Alignment:
Q  1 aattagcttaggtggcacgctgactgtgtattgatcaatgaagtggcactttaacttgg 59  Q
    ||||||||||||||||  | |||||||| |||||||||||| ||||||| || ||||||    
T  6657613 aattagcttaggtggcgtgttgactgtgcattgatcaatgaggtggcacattgacttgg 6657671  T

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Target: scaffold0471 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 11167 - 11268
Alignment:
Q  235 attcaacaaaaaccaacaataaacctcatccacacatataattctcaaaccaaaaagcacactagtttatcatttttatcaaaataaaacccaccaaaca 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  11167 attcaacaaaaaccaacaataaacctcatccacacatataattctcaaaccaaaaa-cacactagtttatcatttttatcaaaataaaacccactaaaca 11265  T
Q  335 cac 337  Q
    |||    
T  11266 cac 11268  T

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Target: scaffold0471; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 10920 - 10979
Alignment:
Q  1 aattagcttaggtggcacgctgactgtgtattgatcaatgaagtggcactttaacttggc 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10920 aattagcttaggtggcacgctgactgtgtattgatcaatgaagtggcactttgacttggc 10979  T

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Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 9306831 - 9306729
Alignment:
Q  235 attcaacaaaaaccaacaataaacctcatccacacatataattctcaaaccaaaaagcacactagtttatcatttttatcaaaataaaacccaccaaaca 334  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  9306831 attcaacaaaaaccaacaataaacctcatccacacatataattttcaaaccaaaaaacacactagtttatcatttttatcaaaataaaacccactaaaca 9306732  T
Q  335 cac 337  Q
    |||    
T  9306731 cac 9306729  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35223266 - 35223323
Alignment:
Q  1 aattagcttaggtggcacgctgactgtgtattgatcaatgaagtggcactttaacttg 58  Q
    |||||||||||||||| |||||||||||||| ||||||||| |||||||||| |||||    
T  35223266 aattagcttaggtggcgcgctgactgtgtatcgatcaatgaggtggcactttgacttg 35223323  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 9307058 - 9307004
Alignment:
Q  5 agcttaggtggcacgctgactgtgtattgatcaatgaagtggcactttaacttgg 59  Q
    ||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||    
T  9307058 agcttaggtggcatgctgactgagtattgatcaatgaggtggcactttgacttgg 9307004  T

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Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 25649688 - 25649586
Alignment:
Q  235 attcaacaaaaaccaacaataaacctcatccacacatataattctcaaaccaaaaagcacactagtttatcatttttatcaaaataaaacccaccaaaca 334  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||    
T  25649688 attcaacaaaaatcaacaataaacctcatccacacatataattctcaaaccaaaaaacacactagtttatcatttttatcaaaataaaatccactaaaca 25649589  T
Q  335 cac 337  Q
    |||    
T  25649588 cac 25649586  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25649922 - 25649863
Alignment:
Q  1 aattagcttaggtggcacgctgactgtgtattgatcaatgaagtggcactttaacttggc 60  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||    
T  25649922 aattagcttaggtggcacgttgactgtgtattgatcaatgaagtgacactttgacttggc 25649863  T

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Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 235 - 328
Target Start/End: Original strand, 15814759 - 15814852
Alignment:
Q  235 attcaacaaaaaccaacaataaacctcatccacacatataattctcaaaccaaaaagcacactagtttatcatttttatcaaaataaaacccac 328  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15814759 attcaacaaaaaacaacaataaacctcatccacacatataattctcaaaccaaaaaacacactagtttatcatttttatcaaaataaaacccac 15814852  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 15814568 - 15814619
Alignment:
Q  1 aattagcttaggtggcacgctgactgtgtattgatcaatgaagtggcacttt 52  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  15814568 aattagcttaggtggcacgctgactgtgtattaatcaatgaggtggcacttt 15814619  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 23456598 - 23456539
Alignment:
Q  1 aattagcttaggtggcacgctgactgtgtattgatcaatgaagtggcactttaacttggc 60  Q
    |||||||||||||||| ||||||||||| |||||||||||| |||||||||| |||||||    
T  23456598 aattagcttaggtggcgcgctgactgtgcattgatcaatgaggtggcactttgacttggc 23456539  T

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Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 235 - 328
Target Start/End: Complemental strand, 49384182 - 49384089
Alignment:
Q  235 attcaacaaaaaccaacaataaacctcatccacacatataattctcaaaccaaaaagcacactagtttatcatttttatcaaaataaaacccac 328  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  49384182 attcaacaaaaatcaacaataaacctcatccacacatataattctcaaaccaaaaaacacactagtttatcatttttatcaaaataaaacccac 49384089  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 49384419 - 49384360
Alignment:
Q  1 aattagcttaggtggcacgctgactgtgtattgatcaatgaagtggcactttaacttggc 60  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||    
T  49384419 aattagcttaggtggcatgctgactgtgtattgatcaatgaggtggcactttgacttggc 49384360  T

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