View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_low_30 (Length: 342)
Name: NF2512_low_30
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 4421938 - 4421623
Alignment:
| Q |
18 |
agaaggggtctgacattaattcatatttgattctttctttaaatgccatgtcctaatttcactaattaactaagaatatacttcagaatattcaattaaa |
117 |
Q |
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| T |
4421938 |
agaaggggtctgacattaattcatatttgattctttctttaaatgccatgtcctaatttcactaattaactaagaatatacttcagaatattcaattaaa |
4421839 |
T |
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| Q |
118 |
tttaatgaatctcatcaaagaaatccagcttgatatattttcataaaagagaagatatcacaatgatattttttgaatgagaa-aaaatatagaaaaatg |
216 |
Q |
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| T |
4421838 |
tttaatgaatctcatcaaagaaatccagcttgatatattttcataaaagagaagatatcacaatgatattttttgaatgagaaaaaaatatagaaaaatg |
4421739 |
T |
|
| Q |
217 |
tgtcggtctacctgagttaaagaaacacaagtatatggttaaataaaccatagtataaggttagaagcattgatgcagaccgctctctcgtgaaacagaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4421738 |
tgtcggtctacctgagttaaagaaacacaagtatatggttaaataaaccatagtataaggttagaagcattgatgcagaccgctcgctcgtgaaacagaa |
4421639 |
T |
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| Q |
317 |
tcgtcggtgactcatt |
332 |
Q |
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|||||||||||||||| |
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| T |
4421638 |
tcgtcggtgactcatt |
4421623 |
T |
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