View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2512_low_31 (Length: 338)
Name: NF2512_low_31
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 127 - 326
Target Start/End: Original strand, 1952761 - 1952960
Alignment:
| Q |
127 |
tgtatatgttggttcggaatccccgaaaccattacaactgaccaaggtaccattagaaattgatgtggcctcattgagggttacccttcaaaatcaacag |
226 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1952761 |
tgtatatgttggtttggaatccccgaaaccattacaactgaccaaggtaccattagaaattgatgtggcctcattgagggttacccttcaaaatcaacag |
1952860 |
T |
|
| Q |
227 |
tctcttgatgaataccggtaggccatgccaatggagctcgactccttggatgaggatcggcatatggcattaggaaagatcaagaagtctaagaacaaaa |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1952861 |
tctcttgatgaataccggtaggccatgccaatggagctcgactccttggatgaggatcggcttatggcattaggaaagatcaagaagtctaagaacaaaa |
1952960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 138 - 326
Target Start/End: Original strand, 1995951 - 1996140
Alignment:
| Q |
138 |
gttcggaatccccgaaaccattacaactgaccaaggtaccattagaaattgatgtggcctcattgagggttacccttcaaaatcaacagtctcttgatga |
237 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||| |||| | |||||||||||||||||||||||| ||| |
|
|
| T |
1995951 |
gttcggaatccccaaaaccattacaactgaccgaggtaccattagaaattgatatggcctcatttaggggtgcccttcaaaatcaacagtctcttggtga |
1996050 |
T |
|
| Q |
238 |
atacc-ggtaggccatgccaatggagctcgactccttggatgaggatcggcatatggcattaggaaagatcaagaagtctaagaacaaaa |
326 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1996051 |
ataccgggtatgccatgccaatggagctcgactccttggatgaggatcggcttatggcattaggaaagatcaagaagtctaagaacaaaa |
1996140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 1973090 - 1973203
Alignment:
| Q |
14 |
atgaatgataccgatgatggtgctcctaaagagagtttagctccaaagagaaagaaagtcggcaagggaggtttgtaattctagcgtacttgttttaaaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
1973090 |
atgaatgataccgatgatggtgctcctaaagagagtttagctccaaagagatagaaagtcagcaagggaggtttgtaattctagcgtacttatttt-aaa |
1973188 |
T |
|
| Q |
114 |
atgttttgtaagatg |
128 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1973189 |
atgttttgtaagatg |
1973203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University