View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2512_low_32 (Length: 333)

Name: NF2512_low_32
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2512_low_32
NF2512_low_32
[»] chr8 (3 HSPs)
chr8 (141-255)||(1431038-1431152)
chr8 (13-79)||(1431216-1431282)
chr8 (13-65)||(38069837-38069888)
[»] chr5 (7 HSPs)
chr5 (144-219)||(15388844-15388919)
chr5 (144-220)||(5249813-5249889)
chr5 (151-220)||(13611380-13611449)
chr5 (22-76)||(15388967-15389023)
chr5 (151-220)||(33642861-33642930)
chr5 (144-220)||(5812942-5813018)
chr5 (13-65)||(33642746-33642797)
[»] chr7 (2 HSPs)
chr7 (148-211)||(20437548-20437611)
chr7 (13-65)||(20419381-20419432)
[»] chr2 (2 HSPs)
chr2 (150-212)||(33470679-33470741)
chr2 (13-65)||(33470562-33470613)
[»] chr4 (1 HSPs)
chr4 (151-220)||(54132527-54132596)


Alignment Details
Target: chr8 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 141 - 255
Target Start/End: Complemental strand, 1431152 - 1431038
Alignment:
Q  141 cctattagatgtgaatcttcattcctaactttaaaaactccatcataaaatgtgaatttgaatacataaaaagtaacaatggaatttatgttaatataac 240  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1431152 cctattaggtgtgaatcttcattcctaactttaaaaactccatcataagatgtgaatttggatacataaaaagtaacaatggaatttatgttaatataac 1431053  T
Q  241 tgcttgaccaaatta 255  Q
    | |||||||||||||    
T  1431052 tacttgaccaaatta 1431038  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 1431282 - 1431216
Alignment:
Q  13 aatatcttaaaaataatatgaaaggtgaagttgttatccaatgcaataaaaaactataacaaatcct 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1431282 aatatcttaaaaataatatgaaaggtgaagttgttatccaatgcaataaaaaactataacaaatcct 1431216  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 38069837 - 38069888
Alignment:
Q  13 aatatcttaaaaataatatgaaaggtgaagttgttatccaatgcaataaaaaa 65  Q
    ||||||||| ||| ||| ||||||||||||||  |||||||||||||||||||    
T  38069837 aatatcttacaaa-aatgtgaaaggtgaagttaatatccaatgcaataaaaaa 38069888  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 15388919 - 15388844
Alignment:
Q  144 attagatgtgaatcttcattcctaactttaaaaactccatcataaaatgtgaatttgaatacataaaaagtaacaa 219  Q
    ||||| ||||||||||||||| |||||| ||||| | |||||||  ||||||| |||||||||||||||| |||||    
T  15388919 attaggtgtgaatcttcattcttaacttcaaaaatttcatcatatgatgtgaacttgaatacataaaaaggaacaa 15388844  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 5249889 - 5249813
Alignment:
Q  144 attagatgtgaatcttcattcctaactttaaaaactccatcataaaatgtgaatttgaatacataaaaagtaacaat 220  Q
    ||||| ||||||||||||||| |||||||||||| | |||||||  |||| || |||||| ||||||||| ||||||    
T  5249889 attaggtgtgaatcttcattcttaactttaaaaatttcatcatatgatgtaaagttgaatgcataaaaaggaacaat 5249813  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 13611380 - 13611449
Alignment:
Q  151 gtgaatcttcattcctaactttaaaaactccatcataaaatgtgaatttgaatacataaaaagtaacaat 220  Q
    ||||||||| |||| || ||||||||| | |||||||| |||||||||||| | ||| |||| |||||||    
T  13611380 gtgaatcttaattcttagctttaaaaatttcatcataagatgtgaatttgattgcatcaaaaataacaat 13611449  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 15389023 - 15388967
Alignment:
Q  22 aaaataatatgaaaggtgaagttgttatccaatgcaataaa--aaactataacaaat 76  Q
    |||| ||| ||||||||||||||  ||||||||||||||||  ||||||||||||||    
T  15389023 aaaaaaatgtgaaaggtgaagttaatatccaatgcaataaaagaaactataacaaat 15388967  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 33642861 - 33642930
Alignment:
Q  151 gtgaatcttcattcctaactttaaaaactccatcataaaatgtgaatttgaatacataaaaagtaacaat 220  Q
    ||||||||| |||| || ||||||||| | |||||||| |||||||||||| | ||| |||| |||||||    
T  33642861 gtgaatcttaattcttagctttaaaaatttcatcataagatgtgaatttgattgcatcaaaaataacaat 33642930  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 5813018 - 5812942
Alignment:
Q  144 attagatgtgaatcttcattcctaactttaaaaactccatcataaaatgtgaatttgaatacataaaaagtaacaat 220  Q
    ||||| ||||||||||||||| ||||||||| || |  ||||||  |||| || |||||| ||||||||| ||||||    
T  5813018 attaggtgtgaatcttcattcttaactttaataattttatcatatgatgtaaacttgaatgcataaaaaggaacaat 5812942  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 33642746 - 33642797
Alignment:
Q  13 aatatcttaaaaataatatgaaaggtgaagttgttatccaatgcaataaaaaa 65  Q
    ||||||||||||| ||||||||||| ||| ||  |||||||||||||||||||    
T  33642746 aatatcttaaaaa-aatatgaaaggagaacttaatatccaatgcaataaaaaa 33642797  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 20437611 - 20437548
Alignment:
Q  148 gatgtgaatcttcattcctaactttaaaaactccatcataaaatgtgaatttgaatacataaaa 211  Q
    ||||||||||||||||| |||||||||||| | |||||||  |||||||||  ||| |||||||    
T  20437611 gatgtgaatcttcattcttaactttaaaaatttcatcatatgatgtgaattgaaatgcataaaa 20437548  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 20419432 - 20419381
Alignment:
Q  13 aatatcttaaaaataatatgaaaggtgaagttgttatccaatgcaataaaaaa 65  Q
    ||||||||| ||| ||| ||||||||||||||  |||||||||||||||||||    
T  20419432 aatatcttacaaa-aatgtgaaaggtgaagttaatatccaatgcaataaaaaa 20419381  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 33470679 - 33470741
Alignment:
Q  150 tgtgaatcttcattcctaactttaaaaactccatcataaaatgtgaatttgaatacataaaaa 212  Q
    ||||||||||||||| |||||||||||  | |||||||  ||||||| |||||| ||||||||    
T  33470679 tgtgaatcttcattcttaactttaaaattttcatcatatgatgtgaacttgaatgcataaaaa 33470741  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 33470562 - 33470613
Alignment:
Q  13 aatatcttaaaaataatatgaaaggtgaagttgttatccaatgcaataaaaaa 65  Q
    ||||||||| ||| ||| ||||||||||||||  |||||||||||||||||||    
T  33470562 aatatcttacaaa-aatgtgaaaggtgaagttaatatccaatgcaataaaaaa 33470613  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 54132527 - 54132596
Alignment:
Q  151 gtgaatcttcattcctaactttaaaaactccatcataaaatgtgaatttgaatacataaaaagtaacaat 220  Q
    ||||||||| |||| || ||||||||| | |||||||| |||||||||||| | ||| |||| |||||||    
T  54132527 gtgaatcttaattcttagctttaaaaatttcatcataagatgtgaatttgattgcatcaaaaataacaat 54132596  T

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