View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2512_low_33 (Length: 333)

Name: NF2512_low_33
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2512_low_33
NF2512_low_33
[»] chr2 (1 HSPs)
chr2 (1-316)||(3429753-3430083)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 3429753 - 3430083
Alignment:
Q  1 ccaaccctacaactgtgttttgtccataactg-----------cgtaccgaagaagataaacaccatcaatctcaacatatatttgagtaaaggaatgaa 89  Q
    ||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||         |||||||||    
T  3429753 ccaaccctacaactgtgttttgtccataactggtctgtgatcacgtaccgaagaagataaacaccatcaatctcaacatata---------aggaatgaa 3429843  T
Q  90 catcttaattagcaattttgatcagacataagtgaggctgtttatattgatcacgactatat--gaaaaggtttgttaaggaacaaatgcaaaccaattg 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||    
T  3429844 catcttaattagcaattttgatcagacataagtgaggctgtttatattgatcacgcctatatatgaaaaggtttgttaaggaacaaatgcaaaccaattg 3429943  T
Q  188 taattaat------taggtctatggagccacatgtatta---gattgggattgt--tctaaccaataacatgttggagagataaccaaccgaacatgact 276  Q
    |||| |||      |||||||||||||||||||||||||   ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  3429944 taatcaatgacaattaggtctatggagccacatgtattattagattgggattgtattctaaccaataacatgttggagagataaccaaccgaacatgact 3430043  T
Q  277 cctaaccaggctttttatacaatgatctaatactaaggat 316  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3430044 cctaaccaggctttttatacaatgatctaatactaaggat 3430083  T

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