View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_low_38 (Length: 303)
Name: NF2512_low_38
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 2206753 - 2206682
Alignment:
| Q |
217 |
caaagcaaacacaccattaaagtggttaaaattgatttcggagatgtaaaattgatttttgacatgtttcat |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2206753 |
caaagcaaacacaccattaaagtggttaaaattgatttcggagatgtaaaattgatttttgacatgtttcat |
2206682 |
T |
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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 2206952 - 2206870
Alignment:
| Q |
18 |
aatttatcatctcatttgaatagnnnnnnncttcttcttttccatctatatgtattattgcattttcataaataattcataaa |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2206952 |
aatttatcatctcatttgaatagttttttttttcttcttttccatctatatgtattattgcattttcataaataattcataaa |
2206870 |
T |
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