View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2512_low_4 (Length: 688)
Name: NF2512_low_4
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 657; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 17 - 677
Target Start/End: Original strand, 47873609 - 47874269
Alignment:
| Q |
17 |
accttcctaatctataaagctcccaaacccaatcaaatatagccatttgatcctccttggcattaagatcaactggttttcttccacttgctaattccaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47873609 |
accttcctaatctataaagctcccaaacccaatcaaatatagccatttgatcctccttggcattaagatcaactggttttcttccacttgctaattccaa |
47873708 |
T |
|
| Q |
117 |
tgaaacaatgccaaagctgtatatatctgattcctttgtagccttccctgttgtgatatattcaggagctatgtaccccatggtcccagctatgattgtg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47873709 |
tgaaacaatgccaaagctgtatatatctgattcctttgtagccttccctgttgtgatatattcaggagctatgtaccccatggtcccagctatgattgtg |
47873808 |
T |
|
| Q |
217 |
gtgtctgattgtgatcctttctcatgatccacaagccttgccaatccgaaatccccaagcttagcattgaaattgttgtctaacatgatgttgctggatt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47873809 |
gtgtctgattgtgatcctttctcatgatccacaagccttgccaatccgaaatccccaagcttagcattgaaattgttgtctaacatgatgttgctggatt |
47873908 |
T |
|
| Q |
317 |
tgacatccctatgaagcacacattgttcccattcttcatgaaggtacaaaagtgctgaagccaagtccatagcaatgttgtacctcatttgccatgtcaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47873909 |
tgacatccctatgaagcacacattgttcccattcttcatgaaggtacaaaagtgctgaagccaagtccatagcaatgttgtacctcatttgccatgtcaa |
47874008 |
T |
|
| Q |
417 |
tacgctttttccgcggtatagatgagaatctaagctaccattttgcatgaactcatatataaggaggaagtcctttttcttgtgacaccaaccaattagt |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47874009 |
tacgctttttccgcggtatagatgagaatctaagctaccattttgcatgaactcatatataaggaggaagtcccttttcttgtgacaccaaccaattagt |
47874108 |
T |
|
| Q |
517 |
tgtactaaattcctatgtctaagctggccaatgatcttcacttcagttgcatattcctttatcccttgtttagactctcttgatattctctttatagcaa |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47874109 |
tgtactaaattcctatgtctaagctggccaatgatcttcacttcagttgcatattcctttatcccttgtttagactctcttgatattctctttatagcaa |
47874208 |
T |
|
| Q |
617 |
cattggtatctatatctttcaaatagcctttataaacaccaccaaaaccaccttgccctat |
677 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47874209 |
cattggtatctatatctttcaaatagcctttataaacaccaccaaaaccaccttgccctat |
47874269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 17 - 677
Target Start/End: Complemental strand, 47871933 - 47871276
Alignment:
| Q |
17 |
accttcctaatctataaagctcccaaacccaatcaaatatagccatttgatcctccttggcattaagatcaactggttttcttccacttgctaattccaa |
116 |
Q |
| |
|
||||||| | ||||||||| ||||| |||| |||||||||||||| |||| |||||||||| ||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
47871933 |
accttccaagtctataaaggtcccagacccgatcaaatatagccacttgaccctccttggccttacgatcaattggttttcttccacttgctaattccaa |
47871834 |
T |
|
| Q |
117 |
tgaaacaatgccaaagctgtatatatctgattcctttgtagccttccctgttgtgatatattcaggagctatgtaccccatggtcccagctatgattgtg |
216 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |||||||| |||||||||||||| ||| |
|
|
| T |
47871833 |
tgaaacaataccaaaactgtatatatcagattcctttgtagctttccctgttgtgaaatattcaggagctatataccccatagtcccagctatgatcgtg |
47871734 |
T |
|
| Q |
217 |
gtgtctgattgtgatcctttctcatgatccacaagccttgccaatccgaaatccccaagcttagcattgaaattgttgtctaacatgatgttgctggatt |
316 |
Q |
| |
|
|| || ||||||| |||||||||||||||| | ||| ||||| || ||||| |||||||| ||||||||| | | ||| ||||| ||||||||||||| |
|
|
| T |
47871733 |
gta-ct--ttgtgatactttctcatgatccaccaacctagccaacccaaaatcaccaagctttgcattgaaactatcgtccaacataatgttgctggatt |
47871637 |
T |
|
| Q |
317 |
tgacatccctatgaagcacacattgttcccattcttcatgaaggtacaaaagtgctgaagccaagtccatagcaatgttgtacctcatttgccatgtcaa |
416 |
Q |
| |
|
| | || ||||||| ||||||||||||||||||||||||||| ||||| | ||| |||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
47871636 |
ttatgtctctatgaatcacacattgttcccattcttcatgaagatacaacaatgccgaagccaaatccatagcaatgttgtacctcacttgccatgtcaa |
47871537 |
T |
|
| Q |
417 |
tacgctttttccgcggtatagatgagaatctaagctaccattttgcatgaactcatatataaggaggaagtcctttttcttgtgacaccaaccaattagt |
516 |
Q |
| |
|
|| |||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
47871536 |
tatgctttttccgcgatataggtgagaatctaagctaccattttgcatgaactcgtatataaggaggaagtcttttttcatgtgacaccaaccaattagt |
47871437 |
T |
|
| Q |
517 |
tgtactaaattcctatgtctaagctggccaatgatcttcacttcagttgcatattcctttatcccttgtttagactctcttgatattctctttatagcaa |
616 |
Q |
| |
|
|||||||||||||| || ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47871436 |
tgtactaaattcctgtgcctaagttggctaatgatcttcacttcagttgcatattcctttatcccttgtttagactctcttgatattctctttatagcaa |
47871337 |
T |
|
| Q |
617 |
cattggtatctatatctttcaaatagcctttataaacaccaccaaaaccaccttgccctat |
677 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47871336 |
cattggaatctatgtctttcaaatagcctttataaacaccaccaaaaccaccttgtcctat |
47871276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 97 - 676
Target Start/End: Complemental strand, 36931579 - 36931006
Alignment:
| Q |
97 |
cttccacttgctaattccaatgaaacaatgccaaagctgtatatatctgattcctttgtagccttccctgttgtgatatattcaggagctatgtacccca |
196 |
Q |
| |
|
|||||||| |||| ||||||| | || | ||||||||| ||||||| |||||||| |||| ||| |||| ||||| ||||||||| || || || ||| |
|
|
| T |
36931579 |
cttccactggctatttccaataacactactccaaagctgaatatatcagattccttggtaggctttcctgatgtgaaatattcaggtgcaatataacccc |
36931480 |
T |
|
| Q |
197 |
tggtcccagctatgattgtggtgtctgattgtgatcctttctcatgatccacaagccttgccaatccgaaatccccaagcttagcattgaaattgttgtc |
296 |
Q |
| |
|
| ||||||||||| |||||||| |||||| || |||||||||| |||||||| || || || ||||| |||||| |||||||||| || |
|
|
| T |
36931479 |
ttgtcccagctataattgtggt------ttgtgaccccgtctcatgatctacaagcctagctaaaccaaaatcaccaagccgagcattgaaacatgaatc |
36931386 |
T |
|
| Q |
297 |
taacatgatgttgctggatttgacatccctatgaagcacacattgttcccattcttcatgaaggtacaaaagtgctgaagccaagtccatagcaatgttg |
396 |
Q |
| |
|
||||| ||||| |||||||| | ||||| ||||||||||| |||||||||||||| || ||||| | | ||||||||||||| ||| || || || |
|
|
| T |
36931385 |
caacataatgttactggatttaatgtccctgtgaagcacacactgttcccattcttcctgtaggtaaagcaatgctgaagccaagcccaatgctatatta |
36931286 |
T |
|
| Q |
397 |
tacctcatttgccatgtcaatacgctttttccgcggtatagatgagaatctaagctaccattttgcatgaactcatatataaggaggaagtcctttttct |
496 |
Q |
| |
|
||||||||| ||||||||||| ||| ||| | ||||||||||||||||||||| |||||| |||||||||||||||||| || || || || ||| |
|
|
| T |
36931285 |
tacctcattgtccatgtcaataagctctttttactgtatagatgagaatctaagcttccatttgacatgaactcatatataagaagaaaatcattcttcc |
36931186 |
T |
|
| Q |
497 |
tgtgacaccaaccaattagttgtactaaattcctatgtctaagctggccaatgatcttcacttcagttgcatattcctttatcccttgtttagactctct |
596 |
Q |
| |
|
| || |||||||||| ||||||||||||||||| ||||| | |||| |||| |||||||||||| || ||||| ||| || ||| |||||||||| |
|
|
| T |
36931185 |
tatggcaccaaccaagaagttgtactaaattcctgtgtctcaattggcttatgaccttcacttcagtggcgtattctagtattccctgtctagactctct |
36931086 |
T |
|
| Q |
597 |
tgatattctctttatagcaacattggtatctatatctttcaaatagcctttataaacaccaccaaaaccaccttgcccta |
676 |
Q |
| |
|
|||||| ||||| | |||||||| || || || ||||||||||| ||||| || ||||||||||||||||||||||||| |
|
|
| T |
36931085 |
tgatatcctcttgacagcaacataggaatttaagtctttcaaataacctttgtatacaccaccaaaaccaccttgcccta |
36931006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 446
Target Start/End: Complemental strand, 5821269 - 5820862
Alignment:
| Q |
20 |
ttcctaatctataaagctcccaaacccaatcaaatatagccatttgatcctccttggcattaagatcaactggttttcttccacttgctaattccaatga |
119 |
Q |
| |
|
|||||| |||||| | |||||||| |||||||||||||| | ||||| || ||||| ||| ||||| |||||| ||||||||| | |||| ||| | |
|
|
| T |
5821269 |
ttcctagtctatacaagtcccaaacacaatcaaatatagctacttgattatctttggccttacgatcagttggtttccttccacttaccaattttaataa |
5821170 |
T |
|
| Q |
120 |
aacaatgccaaag--ctgtatatatctgattcctttgtagccttccctgttgtgatatattcaggagctatgtaccccatggtcccagctatgattgtgg |
217 |
Q |
| |
|
|||||| | ||| ||||||||||| ||||||||||||| |||| |||||||| | ||||||||||| |||| ||| |||||||| || ||| | | |
|
|
| T |
5821169 |
aacaattcaaaaaaactgtatatatcatattcctttgtagctttccttgttgtgaagt--tcaggagctatataccacatagtcccagcaataattttag |
5821072 |
T |
|
| Q |
218 |
tgtctgattgtgatcctttctcatgatccacaagccttgccaatccgaaatccccaagcttagcattgaaattgttgtctaacatgatgttgctggattt |
317 |
Q |
| |
|
| || |||||||||||||||||||||||| | ||| ||||||| |||||| ||||| ||| |||||||| | | ||| ||||| ||||| ||||||| |
|
|
| T |
5821071 |
ta-ct--ttgtgatcctttctcatgatccacca-cctagccaatctgaaatcaccaagtttaacattgaaaatatagtccaacataatgttattggattt |
5820976 |
T |
|
| Q |
318 |
gacatccctatgaagcacacattgttcccattcttcatgaaggtacaaaagtgctgaagccaagtccatagcaatgttgtacctcatttgccatgtcaat |
417 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| | |||| ||||| |||||| |||||||||| ||||| ||| |||||||| |
|
|
| T |
5820975 |
--------tatgt----cacattgttcccattcttcatgaaggtacaacaatgct---gccaaatccataacaatgttgtagctcatatgcaatgtcaat |
5820891 |
T |
|
| Q |
418 |
acgctttttccgcggtatagatgagaatc |
446 |
Q |
| |
|
| | ||||||| || ||| | |||||||| |
|
|
| T |
5820890 |
atgatttttccacgatattggtgagaatc |
5820862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 232 - 353
Target Start/End: Complemental strand, 36934598 - 36934477
Alignment:
| Q |
232 |
cctttctcatgatccacaagccttgccaatccgaaatccccaagcttagcattgaaattgttgtctaacatgatgttgctggatttgacatccctatgaa |
331 |
Q |
| |
|
|||||||||||||||| | ||| || | || |||||||| ||||||| |||||| | | ||| ||||| |||||||| ||||| | |||||||||| |
|
|
| T |
36934598 |
cctttctcatgatccatcaacctagctagaccaaaatcccctagcttagtattgaagtcggagtccaacattatgttgcttgattttatgtccctatgaa |
36934499 |
T |
|
| Q |
332 |
gcacacattgttcccattcttc |
353 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
36934498 |
tcacacatttttcccattcttc |
36934477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 631 - 676
Target Start/End: Complemental strand, 36934199 - 36934154
Alignment:
| Q |
631 |
tctttcaaatagcctttataaacaccaccaaaaccaccttgcccta |
676 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
36934199 |
tctttaaaatagcccttataaacaccgccaaaaccaccttggccta |
36934154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University