View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2512_low_40 (Length: 290)

Name: NF2512_low_40
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2512_low_40
NF2512_low_40
[»] chr3 (19 HSPs)
chr3 (27-274)||(1096572-1096819)
chr3 (216-274)||(2166035-2166093)
chr3 (216-267)||(22470402-22470454)
chr3 (216-274)||(12517328-12517387)
chr3 (216-274)||(18535808-18535867)
chr3 (216-274)||(19912618-19912677)
chr3 (219-274)||(22247035-22247090)
chr3 (214-267)||(7805787-7805841)
chr3 (213-274)||(52935530-52935592)
chr3 (214-274)||(34276435-34276496)
chr3 (215-274)||(819845-819905)
chr3 (213-265)||(4838956-4839010)
chr3 (225-267)||(12771211-12771254)
chr3 (215-254)||(27412657-27412696)
chr3 (216-274)||(27852603-27852662)
chr3 (216-254)||(20886927-20886965)
chr3 (213-250)||(18735298-18735335)
chr3 (216-267)||(2508719-2508771)
chr3 (215-274)||(20891644-20891704)
[»] chr1 (18 HSPs)
chr1 (43-172)||(31431391-31431520)
chr1 (216-274)||(21663090-21663149)
chr1 (216-274)||(15542308-15542367)
chr1 (216-274)||(17365809-17365868)
chr1 (216-274)||(27973341-27973400)
chr1 (216-274)||(33192390-33192449)
chr1 (214-274)||(26647355-26647416)
chr1 (216-274)||(729174-729233)
chr1 (211-254)||(16817103-16817146)
chr1 (216-274)||(18527496-18527555)
chr1 (216-262)||(24464664-24464711)
chr1 (216-254)||(14782589-14782627)
chr1 (72-118)||(25233197-25233243)
chr1 (216-254)||(26611331-26611369)
chr1 (214-263)||(27912113-27912163)
chr1 (213-254)||(25402432-25402473)
chr1 (214-254)||(18734583-18734623)
chr1 (90-138)||(30486153-30486201)
[»] chr5 (14 HSPs)
chr5 (82-138)||(5998785-5998841)
chr5 (213-274)||(25572475-25572537)
chr5 (216-274)||(19003765-19003824)
chr5 (216-274)||(23266854-23266913)
chr5 (214-267)||(17831739-17831792)
chr5 (216-267)||(26069294-26069346)
chr5 (220-274)||(15691306-15691361)
chr5 (215-254)||(23214824-23214863)
chr5 (213-263)||(34488906-34488957)
chr5 (216-273)||(19761581-19761639)
chr5 (213-255)||(31600072-31600114)
chr5 (217-274)||(24320522-24320581)
chr5 (214-254)||(24513194-24513234)
chr5 (216-263)||(29988006-29988054)
[»] chr7 (31 HSPs)
chr7 (215-274)||(8052428-8052487)
chr7 (216-275)||(2565943-2566003)
chr7 (209-274)||(1254689-1254754)
chr7 (215-267)||(10332449-10332502)
chr7 (216-274)||(3585522-3585581)
chr7 (216-274)||(26249075-26249134)
chr7 (215-273)||(9078880-9078940)
chr7 (213-254)||(13287707-13287748)
chr7 (213-254)||(19154877-19154918)
chr7 (213-254)||(20754276-20754317)
chr7 (212-267)||(18986740-18986796)
chr7 (212-267)||(19001368-19001424)
chr7 (216-274)||(4450709-4450768)
chr7 (216-274)||(9767823-9767882)
chr7 (225-267)||(9918212-9918255)
chr7 (225-267)||(9926124-9926167)
chr7 (216-254)||(2927933-2927971)
chr7 (225-274)||(5236875-5236925)
chr7 (216-254)||(13280818-13280856)
chr7 (216-254)||(23173685-23173723)
chr7 (213-254)||(2506817-2506858)
chr7 (226-274)||(9288948-9288997)
chr7 (226-274)||(9298740-9298789)
chr7 (215-267)||(9722486-9722539)
chr7 (213-254)||(13252704-13252745)
chr7 (213-254)||(17189707-17189748)
chr7 (213-254)||(19201319-19201360)
chr7 (85-138)||(23195152-23195205)
chr7 (216-263)||(1810953-1811001)
chr7 (216-267)||(6046572-6046624)
chr7 (215-274)||(11804736-11804796)
[»] chr4 (20 HSPs)
chr4 (214-267)||(17335353-17335407)
chr4 (213-274)||(17434472-17434534)
chr4 (216-274)||(19556541-19556599)
chr4 (216-274)||(15047805-15047864)
chr4 (216-274)||(15106560-15106619)
chr4 (216-274)||(15166506-15166565)
chr4 (216-274)||(25025144-25025203)
chr4 (217-274)||(8968072-8968130)
chr4 (216-274)||(14573487-14573545)
chr4 (213-254)||(22346138-22346179)
chr4 (215-274)||(9849706-9849766)
chr4 (215-254)||(17277904-17277943)
chr4 (213-274)||(11782530-11782592)
chr4 (95-173)||(14337397-14337475)
chr4 (213-254)||(4617153-4617194)
chr4 (215-267)||(13588753-13588806)
chr4 (213-254)||(17218587-17218628)
chr4 (215-274)||(17711344-17711404)
chr4 (214-254)||(22350238-22350278)
chr4 (213-253)||(25096357-25096397)
[»] chr8 (22 HSPs)
chr8 (213-267)||(13833600-13833655)
chr8 (214-275)||(21695411-21695473)
chr8 (213-274)||(29765388-29765451)
chr8 (216-274)||(5151957-5152016)
chr8 (216-274)||(19705024-19705083)
chr8 (216-274)||(20400372-20400431)
chr8 (30-136)||(6586850-6586956)
chr8 (216-254)||(6886729-6886767)
chr8 (216-274)||(24518588-24518646)
chr8 (213-254)||(21316842-21316883)
chr8 (216-267)||(17650006-17650058)
chr8 (29-185)||(43063019-43063178)
chr8 (216-274)||(13313271-13313330)
chr8 (215-254)||(14271900-14271939)
chr8 (30-136)||(6662535-6662641)
chr8 (30-136)||(6742937-6743043)
chr8 (216-254)||(19265881-19265919)
chr8 (225-274)||(24381995-24382045)
chr8 (216-254)||(28275324-28275362)
chr8 (216-254)||(29380960-29380998)
chr8 (213-274)||(24750864-24750925)
chr8 (213-254)||(26829463-26829504)
[»] scaffold0043 (1 HSPs)
scaffold0043 (213-274)||(88433-88495)
[»] chr2 (15 HSPs)
chr2 (213-274)||(28918226-28918288)
chr2 (215-274)||(17891769-17891829)
chr2 (216-274)||(16157084-16157143)
chr2 (216-274)||(23010043-23010102)
chr2 (216-274)||(35680100-35680159)
chr2 (214-274)||(17351016-17351077)
chr2 (215-274)||(18970774-18970832)
chr2 (216-274)||(26313216-26313275)
chr2 (216-254)||(25537615-25537653)
chr2 (216-254)||(29144694-29144732)
chr2 (87-157)||(43669330-43669400)
chr2 (217-254)||(18120546-18120583)
chr2 (213-254)||(25532295-25532336)
chr2 (216-274)||(34574551-34574611)
chr2 (88-138)||(27732113-27732160)
[»] scaffold0258 (1 HSPs)
scaffold0258 (216-254)||(20252-20290)
[»] scaffold0005 (1 HSPs)
scaffold0005 (216-274)||(243831-243889)
[»] scaffold0386 (1 HSPs)
scaffold0386 (218-274)||(4874-4931)
[»] chr6 (15 HSPs)
chr6 (87-136)||(253224-253273)
chr6 (218-274)||(9841057-9841114)
chr6 (215-274)||(14641670-14641730)
chr6 (216-274)||(21687129-21687188)
chr6 (214-267)||(9519777-9519831)
chr6 (87-133)||(11343910-11343956)
chr6 (225-274)||(22564558-22564608)
chr6 (214-254)||(7543116-7543157)
chr6 (217-254)||(17379461-17379498)
chr6 (215-274)||(1636671-1636731)
chr6 (216-267)||(9897868-9897920)
chr6 (216-267)||(14076441-14076493)
chr6 (215-274)||(14727172-14727232)
chr6 (217-276)||(24469834-24469894)
chr6 (216-275)||(24480061-24480121)
[»] scaffold0032 (1 HSPs)
scaffold0032 (216-254)||(92828-92866)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 1096572 - 1096819
Alignment:
Q  27 agaaaagcatgtttccatgtcttagcttcttctttctcatataacttctacttcgtacacgatggaggtattggacaaccatctttcaaaaatacatgaa 126  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1096572 agaaaagcatgtttccatgtcttagcttcttctttctcgtataacttctacttcgtacacgatggaggtattggacaaccatctttcaaaaatacatgaa 1096671  T
Q  127 caaaatgattggcagttcagccaatacacataatgttggtatttgggttaagtggtggacgacttttgattactcagtaataatgtttgtgatgacaagt 226  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1096672 caaaatgattgggagttcagccaatacacataatgttggtatttgagttaagtggtggacgacttttgattactcagtaataatgtttgtgatgacaggt 1096771  T
Q  227 catcttacgttattcttggcatgtttttagtcattttcagtcggtttt 274  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  1096772 catcttacgttattctttgcatgtttttagtcattttcagtcagtttt 1096819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 2166035 - 2166093
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgtttttagtcattttcagtcggtttt 274  Q
    |||||||| |||||  ||||||||||||||||||||||| |||||||||||| ||||||    
T  2166035 tgatgacaggtcatgatacgttattcttggcatgttttttgtcattttcagtaggtttt 2166093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 22470402 - 22470454
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagt 267  Q
    |||||||| ||||||||||||||||||| |||||||||| |||||||||||||    
T  22470402 tgatgacatgtcatcttacgttattcttagcatgtttttcagtcattttcagt 22470454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 12517387 - 12517328
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||| ||||||||||||||||||| |||| ||||| ||||||||||||| ||||||    
T  12517387 tgatgacaggtcatcttacgttattcttagcatctttttcagtcattttcagtaggtttt 12517328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 18535867 - 18535808
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||||||||||||||||||||||| |||||||||| ||||| ||| ||| ||||||    
T  18535867 tgatgacaagtcatcttacgttattcttagcatgtttttcagtcaattttagtaggtttt 18535808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 19912677 - 19912618
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||| ||||||||||||||||||| |||| ||||| ||||||||||||| ||||||    
T  19912677 tgatgacaggtcatcttacgttattcttagcatatttttcagtcattttcagtaggtttt 19912618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 22247090 - 22247035
Alignment:
Q  219 tgacaagtcatcttacgttattcttggcatgtttttagtcattttcagtcggtttt 274  Q
    ||||| ||||||||||||||||||| |||| |||| ||||||||||||| ||||||    
T  22247090 tgacatgtcatcttacgttattcttagcattttttcagtcattttcagtaggtttt 22247035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 7805841 - 7805787
Alignment:
Q  214 tgtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagt 267  Q
    |||||||||| ||||||||||||||||||| |||||||||| | |||||||||||    
T  7805841 tgtgatgacaggtcatcttacgttattcttagcatgtttttcaatcattttcagt 7805787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 52935530 - 52935592
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||||| | ||||||||||||||||||| |||||||||| | ||||||||||| ||||||    
T  52935530 ttgtgatgataggtcatcttacgttattcttagcatgtttttcaatcattttcagtaggtttt 52935592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 34276435 - 34276496
Alignment:
Q  214 tgtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||||| ||||| ||||||||||||| |||| ||||| ||||||||||||| ||||||    
T  34276435 tgtgatgacaggtcattttacgttattcttagcatatttttcagtcattttcagtaggtttt 34276496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 819845 - 819905
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||| | ||||||||||||||||||| |||||||||| ||||| ||||||| ||||||    
T  819845 gtgatgataggtcatcttacgttattcttagcatgtttttcagtcaatttcagtaggtttt 819905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 4839010 - 4838956
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt--agtcattttca 265  Q
    ||||||| |||  |||||||||||||||||||||||||||||  |||||||||||    
T  4839010 ttgtgataacatatcatcttacgttattcttggcatgtttttccagtcattttca 4838956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 12771211 - 12771254
Alignment:
Q  225 gtcatcttacgttattcttggcatgttttt-agtcattttcagt 267  Q
    ||||||||||||||||||| |||||||||| |||||||||||||    
T  12771211 gtcatcttacgttattcttagcatgtttttcagtcattttcagt 12771254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 27412657 - 27412696
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  27412657 gtgatgacaagtcatcttacgttatttttagcatgttttt 27412696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 27852603 - 27852662
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgt-ttttagtcattttcagtcggtttt 274  Q
    |||||||| ||| |||||||||||| || |||||| ||||||||||||||||| ||||||    
T  27852603 tgatgacatgtcgtcttacgttatttttagcatgtcttttagtcattttcagtaggtttt 27852662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 20886965 - 20886927
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  20886965 tgatgacaggtcatcttacgttattcttagcatgttttt 20886927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 18735298 - 18735335
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgt 250  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  18735298 ttgtgatgacaggtcatcttacgttattcttagcatgt 18735335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 2508719 - 2508771
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagt 267  Q
    ||||| || ||||||||||||||||||| | |||||||| |||||||||||||    
T  2508719 tgatggcatgtcatcttacgttattcttagtatgtttttcagtcattttcagt 2508771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 20891644 - 20891704
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||| || ||||||||||||||||||| |||| ||||| |||| |||||||| ||||||    
T  20891644 gtgatggcaggtcatcttacgttattcttagcatatttttcagtcgttttcagtaggtttt 20891704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 31431391 - 31431520
Alignment:
Q  43 atgtcttagcttcttctttctcatataacttctacttcgtacacgatggaggtattggacaaccatctttcaaaaatacatgaacaaaatgattggcagt 142  Q
    |||||| |||||||||||||   |||| |||| ||||||||||||| |||||||||| ||||||||||||||||||| | |||||||| || ||||   |    
T  31431391 atgtctcagcttcttctttcatgtatagcttccacttcgtacacgacggaggtattgaacaaccatctttcaaaaatccttgaacaaagtggttggggat 31431490  T
Q  143 tcagccaatacacataatgttggtatttgg 172  Q
    | |||||| | || ||||||||||||||||    
T  31431491 taagccaagagacgtaatgttggtatttgg 31431520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 21663090 - 21663149
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||| ||||||||||||||||||| |||||||||| ||||||||||||| ||||||    
T  21663090 tgatgacaggtcatcttacgttattcttagcatgtttttcagtcattttcagtaggtttt 21663149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 15542308 - 15542367
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||| |||||||||||||||||||  ||||||||| ||||||||||||| ||||||    
T  15542308 tgatgacatgtcatcttacgttattcttaacatgtttttcagtcattttcagtaggtttt 15542367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 17365868 - 17365809
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcat-gtttttagtcattttcagtcggtttt 274  Q
    |||||||||||||||| ||||||||||||| ||  |||||||||||||||||| ||||||    
T  17365868 tgatgacaagtcatctcacgttattcttggaatattttttagtcattttcagtaggtttt 17365809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 27973400 - 27973341
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||| ||| |||||||||||||||| |||||||||| ||||||||||||| ||||||    
T  27973400 tgatgaccagttatcttacgttattcttagcatgtttttcagtcattttcagtaggtttt 27973341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 33192449 - 33192390
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||| ||||||| ||||||    
T  33192449 tgatgacaagtcatcttacgctattcttagcatgtttttcagtcaatttcagtaggtttt 33192390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 26647355 - 26647416
Alignment:
Q  214 tgtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||||| ||||||||||||||||||| |||| ||||| |||| |||||||| ||||||    
T  26647355 tgtgatgacaggtcatcttacgttattcttagcatatttttcagtctttttcagtaggtttt 26647416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 729233 - 729174
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatg-tttttagtcattttcagtcggtttt 274  Q
    |||||| | ||||||||||||||||||| ||||| |||| ||||||||||||| ||||||    
T  729233 tgatgaaaggtcatcttacgttattcttagcatgcttttcagtcattttcagtaggtttt 729174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 16817103 - 16817146
Alignment:
Q  211 gtttgtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||| ||||||||||||||||||||||||||||  |||||||||    
T  16817103 gtttctgatgacaagtcatcttacgttattcttaacatgttttt 16817146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 18527496 - 18527555
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||||||||||||||||||||||| |||| ||||| | ||||||||| | ||||||    
T  18527496 tgatgacaagtcatcttacgttattcttagcatctttttcactcattttcaataggtttt 18527555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 24464711 - 24464664
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattt 262  Q
    |||||||| ||||||||||||||||||| |||||||||| ||||||||    
T  24464711 tgatgacatgtcatcttacgttattcttagcatgtttttcagtcattt 24464664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 14782627 - 14782589
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  14782627 tgatgacaggtcatcttacgttattcttagcatgttttt 14782589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 25233243 - 25233197
Alignment:
Q  72 ttctacttcgtacacgatggaggtattggacaaccatctttcaaaaa 118  Q
    |||||||||||| | |||| ||||||||||||||||||||| |||||    
T  25233243 ttctacttcgtagatgatgaaggtattggacaaccatctttaaaaaa 25233197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 254
Target Start/End: Original strand, 26611331 - 26611369
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  26611331 tgatgacaggtcatcttacgttattcttagcatgttttt 26611369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 27912163 - 27912113
Alignment:
Q  214 tgtgatgacaagtcatcttacgttattcttggcatgttttt-agtcatttt 263  Q
    |||||||||| |||||||||||||||||||  ||||||||| |||||||||    
T  27912163 tgtgatgacatgtcatcttacgttattcttaacatgtttttcagtcatttt 27912113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 25402432 - 25402473
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    ||||||||||| |||||||| |||||||||| ||||||||||    
T  25402432 ttgtgatgacaggtcatcttgcgttattcttagcatgttttt 25402473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 18734583 - 18734623
Alignment:
Q  214 tgtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||||| || |||||||||||||||| ||||||||||    
T  18734583 tgtgatgacaggttatcttacgttattcttagcatgttttt 18734623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 30486201 - 30486153
Alignment:
Q  90 ggaggtattggacaaccatctttcaaaaatacatgaacaaaatgattgg 138  Q
    ||||||| ||| || ||||| |||| |||||||||||||||||||||||    
T  30486201 ggaggtagtggtcacccatccttcagaaatacatgaacaaaatgattgg 30486153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 5998785 - 5998841
Alignment:
Q  82 tacacgatggaggtattggacaaccatctttcaaaaatacatgaacaaaatgattgg 138  Q
    |||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  5998785 tacatgatggaggtattggacacccatctttcaaaaatatatgaacaaaatgattgg 5998841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 25572475 - 25572537
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||||| ||||||| ||||||    
T  25572475 ttgtgatgacaagtcatcctacgttattcttagcatgtttttcagtcaatttcagtaggtttt 25572537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 19003765 - 19003824
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||| || ||||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  19003765 tgatgacatgtgatcttacgttattcttggcatgtttttcagttattttcagtaggtttt 19003824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 23266913 - 23266854
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgt-ttttagtcattttcagtcggtttt 274  Q
    |||||||| |||||||||| ||||| ||||||||| ||||||||||||||||| ||||||    
T  23266913 tgatgacaggtcatcttacattatttttggcatgttttttagtcattttcagtaggtttt 23266854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 17831792 - 17831739
Alignment:
Q  214 tgtgatgacaagtcatcttacgttattcttggcatgtttttagtcattttcagt 267  Q
    |||||||||| ||||||||||||||||||| ||||||||||   ||||||||||    
T  17831792 tgtgatgacatgtcatcttacgttattcttagcatgtttttcagcattttcagt 17831739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 26069346 - 26069294
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatg-tttttagtcattttcagt 267  Q
    ||||||||||| ||||||||||||||||  |||| ||||||||||||||||||    
T  26069346 tgatgacaagttatcttacgttattcttaacatgttttttagtcattttcagt 26069294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 15691361 - 15691306
Alignment:
Q  220 gacaagtcatcttacgttattcttggcat-gtttttagtcattttcagtcggtttt 274  Q
    |||| ||||||||||||||||||| ||||  |||||||||||||||||| ||||||    
T  15691361 gacatgtcatcttacgttattcttagcatattttttagtcattttcagtaggtttt 15691306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 23214824 - 23214863
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  23214824 gtgatgacaggtcatcttacgttattcttagcatgttttt 23214863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 34488957 - 34488906
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt-agtcatttt 263  Q
    |||||||| || ||||||||||||||||||| |||||||||| |||||||||    
T  34488957 ttgtgatggcaggtcatcttacgttattcttagcatgtttttcagtcatttt 34488906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 19761581 - 19761639
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgtt-tttagtcattttcagtcggttt 273  Q
    |||||||| |||||||||||||||| || ||||||| || ||||||||||||| |||||    
T  19761581 tgatgacaggtcatcttacgttattattagcatgttattcagtcattttcagtaggttt 19761639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 31600072 - 31600114
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttta 255  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||    
T  31600072 ttgtgatgacaggtcctcttacgttattcttagcatgttttta 31600114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 24320522 - 24320581
Alignment:
Q  217 gatgacaagtcatcttacgttattcttggcatg--tttttagtcattttcagtcggtttt 274  Q
    ||||||| |||||||||||||||||||  ||||  |||||| ||||||||||| ||||||    
T  24320522 gatgacaggtcatcttacgttattcttaacatgtttttttattcattttcagtaggtttt 24320581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 24513194 - 24513234
Alignment:
Q  214 tgtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||| ||| ||||||||||||||||||| ||||||||||    
T  24513194 tgtgattacaggtcatcttacgttattcttagcatgttttt 24513234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 29988054 - 29988006
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcatttt 263  Q
    |||||||| |||||||||||||||| || |||||||||| |||||||||    
T  29988054 tgatgacaggtcatcttacgttatttttagcatgtttttcagtcatttt 29988006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 8052428 - 8052487
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgtttttagtcattttcagtcggtttt 274  Q
    |||||||||| |||||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  8052428 gtgatgacaaatcatcttacgttattcttagcatgttttcagtcattttcagtaggtttt 8052487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 2566003 - 2565943
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggttttg 275  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||||||||||| |||||||    
T  2566003 tgatgacaagtcatcttacgatattcttagcatgtttttcagtcattttcagtaggttttg 2565943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 274
Target Start/End: Original strand, 1254689 - 1254754
Alignment:
Q  209 atgtttgtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||| ||||||||||||||||||||||||| || |||||||||| ||||||||||||| ||||||    
T  1254689 atgtttatgatgacaagtcatcttacgttatt-ttagcatgtttttcagtcattttcagttggtttt 1254754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 10332502 - 10332449
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagt 267  Q
    ||||||||| ||||||||||||||||||| |||||||||| |||||||||||||    
T  10332502 gtgatgacatgtcatcttacgttattcttagcatgtttttcagtcattttcagt 10332449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 3585522 - 3585581
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||||||||||||||| |||||||| |||||||||| | ||||||||||| ||||||    
T  3585522 tgatgacaagtcatcttacattattcttagcatgtttttcaatcattttcagtaggtttt 3585581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 26249075 - 26249134
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||| ||||||||||||||||| | |||||||||| ||||||||||||| ||||||    
T  26249075 tgatgacaggtcatcttacgttattcatagcatgtttttcagtcattttcagtaggtttt 26249134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 9078880 - 9078940
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgttttt--agtcattttcagtcggttt 273  Q
    ||||||||| ||||||||||||||||||| ||||||||||  ||| ||||||||| |||||    
T  9078880 gtgatgacatgtcatcttacgttattcttagcatgttttttcagttattttcagtaggttt 9078940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 13287707 - 13287748
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||||||||||||||||||||||||||  |||||||||    
T  13287707 ttgtgatgacaagtcatcttacgttattcttaacatgttttt 13287748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 19154918 - 19154877
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  19154918 ttgtgatgacaggtcatcttacgttattcttagcatgttttt 19154877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 20754317 - 20754276
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  20754317 ttgtgatgacaggtcatcttacgttattcttagcatgttttt 20754276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 18986740 - 18986796
Alignment:
Q  212 tttgtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagt 267  Q
    ||||||||||||  |||||||||||||||||| |||||||||| ||||| |||||||    
T  18986740 tttgtgatgacatatcatcttacgttattcttagcatgtttttcagtcaatttcagt 18986796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 19001368 - 19001424
Alignment:
Q  212 tttgtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagt 267  Q
    ||||||||||||  |||||||||||||||||| |||||||||| ||||| |||||||    
T  19001368 tttgtgatgacatatcatcttacgttattcttagcatgtttttcagtcaatttcagt 19001424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 4450768 - 4450709
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgtttt-tagtcattttcagtcggtttt 274  Q
    ||||||||  |||||||||||||||||| |||||||||  ||||||||||||| ||||||    
T  4450768 tgatgacagatcatcttacgttattcttagcatgttttccagtcattttcagtaggtttt 4450709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 9767882 - 9767823
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||| ||||||| ||||||||||| |||||||||| || |||||||||| ||||||    
T  9767882 tgatgacaggtcatctcacgttattcttagcatgtttttcagccattttcagtaggtttt 9767823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 9918255 - 9918212
Alignment:
Q  225 gtcatcttacgttattcttggcatgttttt-agtcattttcagt 267  Q
    |||||||||||||||||||| ||||||||| |||||||||||||    
T  9918255 gtcatcttacgttattcttgacatgtttttgagtcattttcagt 9918212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 9926167 - 9926124
Alignment:
Q  225 gtcatcttacgttattcttggcatgttttt-agtcattttcagt 267  Q
    |||||||||||||||||||| ||||||||| |||||||||||||    
T  9926167 gtcatcttacgttattcttgacatgtttttgagtcattttcagt 9926124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 2927971 - 2927933
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  2927971 tgatgacaggtcatcttacgttattcttagcatgttttt 2927933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 5236875 - 5236925
Alignment:
Q  225 gtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||| ||||||    
T  5236875 gtcatcttacgttattcttagcatgtttttcagttattttcagtaggtttt 5236925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 13280856 - 13280818
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  13280856 tgatgacatgtcatcttacgttattcttagcatgttttt 13280818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 254
Target Start/End: Original strand, 23173685 - 23173723
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  23173685 tgatgacatgtcatcttacgttattcttagcatgttttt 23173723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 2506817 - 2506858
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    ||||||||||| ||||||||||||||||||  ||||||||||    
T  2506817 ttgtgatgacaggtcatcttacgttattctcagcatgttttt 2506858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 9288997 - 9288948
Alignment:
Q  226 tcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||| ||||||    
T  9288997 tcatcttacattattcttggcatgtttttcagtcaatttcagtaggtttt 9288948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 9298789 - 9298740
Alignment:
Q  226 tcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||| ||||||    
T  9298789 tcatcttacattattcttggcatgtttttcagtcaatttcagtaggtttt 9298740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 9722539 - 9722486
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagt 267  Q
    |||||||||| ||||||||||||||| || |||||||||| | |||||||||||    
T  9722539 gtgatgacaaatcatcttacgttattattagcatgtttttcaatcattttcagt 9722486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 13252704 - 13252745
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||| || ||||||||||||||||||| ||||||||||    
T  13252704 ttgtgatggcaggtcatcttacgttattcttagcatgttttt 13252745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 17189707 - 17189748
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    ||||||||||| |||||||||| |||||||| ||||||||||    
T  17189707 ttgtgatgacatgtcatcttacattattcttagcatgttttt 17189748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 19201319 - 19201360
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||||||  |||||||||||||||||| ||||||||||    
T  19201319 ttgtgatgacagatcatcttacgttattcttagcatgttttt 19201360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 23195152 - 23195205
Alignment:
Q  85 acgatggaggtattggacaaccatctttcaaaaatacatgaacaaaatgattgg 138  Q
    |||||||| ||||||||||||||| ||| |||||| || |||||||||| ||||    
T  23195152 acgatggacgtattggacaaccattttttaaaaatgcaagaacaaaatgtttgg 23195205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 1811001 - 1810953
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcatttt 263  Q
    |||||||| ||||||||||||||||| | |||||||||| |||||||||    
T  1811001 tgatgacatgtcatcttacgttattcgtagcatgtttttcagtcatttt 1810953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 6046624 - 6046572
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatg-tttttagtcattttcagt 267  Q
    |||||| ||||||||||| |||||||||  |||| ||||||||||||||||||    
T  6046624 tgatgataagtcatcttatgttattcttaacatgttttttagtcattttcagt 6046572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 274
Target Start/End: Complemental strand, 11804796 - 11804736
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||||  |||||||||||||||| |  ||||||||| ||||||||||||| ||||||    
T  11804796 gtgatgacagatcatcttacgttattcataacatgtttttcagtcattttcagtaggtttt 11804736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 17335353 - 17335407
Alignment:
Q  214 tgtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagt 267  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  17335353 tgtgatgacatgtcatcttacgttattcttggcatgtttttcagtcattttcagt 17335407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 17434534 - 17434472
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||||||| |||||||||||||||| || |||||||||| ||||||||||||| ||||||    
T  17434534 ttgtgatgacaggtcatcttacgttatttttagcatgtttttaagtcattttcagtaggtttt 17434472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 19556541 - 19556599
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgtttttagtcattttcagtcggtttt 274  Q
    |||||||| ||||||||||||||||||| ||||||||| ||||||||||| | ||||||    
T  19556541 tgatgacaggtcatcttacgttattcttagcatgttttcagtcattttcaataggtttt 19556599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 15047864 - 15047805
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||| ||||||| ||||||    
T  15047864 tgatgacaattcattttacgttattcttggcatgtttttcagtcaatttcagtaggtttt 15047805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 15106560 - 15106619
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||| ||||||| ||||||    
T  15106560 tgatgacaattcattttacgttattcttggcatgtttttcagtcaatttcagtaggtttt 15106619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 15166565 - 15166506
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||| |||||||||| |||||||| |||||||||| ||||||||||||| ||||||    
T  15166565 tgatgacaggtcatcttacattattcttagcatgtttttcagtcattttcagtaggtttt 15166506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 25025203 - 25025144
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||| ||||||||||||||||||| |||||||||| ||||||||| ||| ||||||    
T  25025203 tgatgacaggtcatcttacgttattcttagcatgtttttcagtcatttttagtaggtttt 25025144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 8968072 - 8968130
Alignment:
Q  217 gatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||| ||||||||||||||||||| |||||||||| ||||||||| ||| ||||||    
T  8968072 gatgacatgtcatcttacgttattcttagcatgtttttcagtcattttaagtaggtttt 8968130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 14573545 - 14573487
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgtttttagtcattttcagtcggtttt 274  Q
    ||||||||  |||||||||||||||||| |||| |||||||||||||| ||| ||||||    
T  14573545 tgatgacatatcatcttacgttattcttagcatatttttagtcattttaagtaggtttt 14573487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 22346179 - 22346138
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    ||||||||||||||||||||||||||||||| |||| |||||    
T  22346179 ttgtgatgacaagtcatcttacgttattcttagcatattttt 22346138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 9849706 - 9849766
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||||| ||||||||||||||||||| | |||||||| ||||||||| ||| ||||||    
T  9849706 gtgatgacaggtcatcttacgttattcttagtatgtttttcagtcatttttagtaggtttt 9849766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 17277943 - 17277904
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  17277943 gtgatgacatgtcatcttacgttattcttagcatgttttt 17277904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 11782592 - 11782530
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatg-tttttagtcattttcagtcggtttt 274  Q
    ||||||||| | |||||||||||||||||||  |||| |||||||||||||| ||| ||||||    
T  11782592 ttgtgatgataggtcatcttacgttattcttaacatgttttttagtcattttaagtaggtttt 11782530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 14337397 - 14337475
Alignment:
Q  95 tattggacaaccatctttcaaaaatacatgaacaaaatgattggcagttcagccaatacacataatgttggtatttggg 173  Q
    ||||||| ||||||||||||||||| |||||||||| ||||      || |||||| ||||||||||| ||||||||||    
T  14337397 tattggataaccatctttcaaaaatgcatgaacaaagtgatcatgtattaagccaagacacataatgtaggtatttggg 14337475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 4617194 - 4617153
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    ||||||||||| ||||||||||||||||||| || |||||||    
T  4617194 ttgtgatgacaggtcatcttacgttattcttagcttgttttt 4617153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 13588806 - 13588753
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagt 267  Q
    |||||||||| ||||||||||||||| || |||||||||| | |||||||||||    
T  13588806 gtgatgacaaatcatcttacgttattattagcatgtttttcaatcattttcagt 13588753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 17218628 - 17218587
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    ||||||||| | ||||||||||||||||||| ||||||||||    
T  17218628 ttgtgatgataggtcatcttacgttattcttagcatgttttt 17218587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 274
Target Start/End: Complemental strand, 17711404 - 17711344
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||||| ||||  |||| |||||||| |||||||||| ||||||||||||| ||||||    
T  17711404 gtgatgacaggtcaaattacattattcttagcatgttttttagtcattttcagtaggtttt 17711344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 22350238 - 22350278
Alignment:
Q  214 tgtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    ||||||||||| ||||||||| |||||||| ||||||||||    
T  22350238 tgtgatgacaaatcatcttacattattcttagcatgttttt 22350278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 25096397 - 25096357
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgtttt 253  Q
    ||||||||||| ||||||||||||| ||||| |||||||||    
T  25096397 ttgtgatgacatgtcatcttacgttgttcttagcatgtttt 25096357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 13833600 - 13833655
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagt 267  Q
    |||||||||||||| |||||||||||||||| |||||||||| |||||||||||||    
T  13833600 ttgtgatgacaagtaatcttacgttattctttgcatgtttttcagtcattttcagt 13833655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 21695411 - 21695473
Alignment:
Q  214 tgtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggttttg 275  Q
    |||||||||| ||||||||||||||||||| |||||||||| ||||| ||||||| |||||||    
T  21695411 tgtgatgacatgtcatcttacgttattcttagcatgtttttcagtcaatttcagtaggttttg 21695473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 29765388 - 29765451
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatg--tttttagtcattttcagtcggtttt 274  Q
    ||||||||||| ||||||||||||||||||| |||||  |||||||| ||||||||| ||||||    
T  29765388 ttgtgatgacaggtcatcttacgttattcttagcatgtttttttagttattttcagtaggtttt 29765451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 5152016 - 5151957
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||||||||||||||||||||||||  ||||||||| ||| ||||||||| ||||||    
T  5152016 tgatgacaagtcatcttacgttattcttaacatgtttttcagtaattttcagttggtttt 5151957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 19705083 - 19705024
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||| ||||||||||||||||||| | |||||||| ||||||||||||| ||||||    
T  19705083 tgatgacatgtcatcttacgttattcttagtatgtttttcagtcattttcagtaggtttt 19705024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 20400431 - 20400372
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatg-tttttagtcattttcagtcggtttt 274  Q
    |||||||| ||||||||||||||||||| ||||| |||| ||||||||||||| ||||||    
T  20400431 tgatgacaggtcatcttacgttattcttagcatgcttttcagtcattttcagtgggtttt 20400372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 6586850 - 6586956
Alignment:
Q  30 aaagcatgtttccatgtcttagcttcttctttctcatataacttctacttcgtacacgatggaggtattggacaaccatctttcaaaaatacatgaacaa 129  Q
    ||||||| || |||||||| ||| |||||  |||  |||| ||||||||  ||| |||||||| |||||||| || |||||||||||||  || ||||||    
T  6586850 aaagcatattcccatgtctcagcctcttcgctcttgtatagcttctactctgtagacgatggatgtattggaaaatcatctttcaaaaaagcaagaacaa 6586949  T
Q  130 aatgatt 136  Q
    |||||||    
T  6586950 aatgatt 6586956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 6886767 - 6886729
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  6886767 tgatgacaagtcatcttacgttattcttagcatgttttt 6886729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 24518588 - 24518646
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgtttttagtcattttcagtcggtttt 274  Q
    |||||||| ||||||| ||||||||||| | ||||||||||| ||||||||| ||||||    
T  24518588 tgatgacatgtcatctaacgttattcttagtatgtttttagttattttcagtaggtttt 24518646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 21316883 - 21316842
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  21316883 ttgtgatgacaggtcatcttacgttattcttagcatgttttt 21316842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 17650058 - 17650006
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagt 267  Q
    ||||||||||||||||||||||||||||  ||||||||| |||| ||||||||    
T  17650058 tgatgacaagtcatcttacgttattcttaacatgtttttcagtcgttttcagt 17650006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 43063178 - 43063019
Alignment:
Q  29 aaaagcatgtttccatgtcttagcttcttctttctcatataacttctacttcgtacacgatggagg-tattggacaaccatctttcaaaaataca--tga 125  Q
    |||| ||||||  ||||||| || |||||||||||  |||| |||| ||| |||||| |||  ||| |||| ||||| ||||||| ||||||| |  | |    
T  43063178 aaaaacatgttatcatgtctcagtttcttctttcttgtatagcttccactccgtacatgataaagggtattagacaaacatcttttaaaaataaaaatta 43063079  T
Q  126 acaaaatgattggcagttcagccaatacacataatgttggtatttgggttaagtggtgga 185  Q
    ||||| ||||||   ||  |||||||||||||||||| | ||||| ||||||||||||||    
T  43063078 acaaagtgattgagggtgaagccaatacacataatgtggatattttggttaagtggtgga 43063019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 13313271 - 13313330
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||| ||| ||||||||||||||| |||||||||| ||||||||||| | ||||||    
T  13313271 tgatgacatgtcgtcttacgttattcttagcatgtttttcagtcattttcaataggtttt 13313330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 14271939 - 14271900
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  14271939 gtgatgacaggtcatcttacgttattcttagcatgttttt 14271900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 6662535 - 6662641
Alignment:
Q  30 aaagcatgtttccatgtcttagcttcttctttctcatataacttctacttcgtacacgatggaggtattggacaaccatctttcaaaaatacatgaacaa 129  Q
    ||||||| || |||||||| ||| |||||  |||  |||| |||| |||  ||| |||||||| |||||||| || |||||||||||||  || ||||||    
T  6662535 aaagcatattcccatgtctgagcctcttcgctcttgtatatcttccactctgtagacgatggatgtattggaaaatcatctttcaaaaaagcaagaacaa 6662634  T
Q  130 aatgatt 136  Q
    |||||||    
T  6662635 aatgatt 6662641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 6742937 - 6743043
Alignment:
Q  30 aaagcatgtttccatgtcttagcttcttctttctcatataacttctacttcgtacacgatggaggtattggacaaccatctttcaaaaatacatgaacaa 129  Q
    ||||||| || |||||||| ||| |||||  |||  |||| |||| |||  ||| |||||||| |||||||| || |||||||||||||  || ||||||    
T  6742937 aaagcatattcccatgtctgagcctcttcgctcttgtatatcttccactctgtagacgatggatgtattggaaaatcatctttcaaaaaagcaagaacaa 6743036  T
Q  130 aatgatt 136  Q
    |||||||    
T  6743037 aatgatt 6743043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 19265919 - 19265881
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  19265919 tgatgacaggtcatcttacgttattcttagcatgttttt 19265881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 24381995 - 24382045
Alignment:
Q  225 gtcatcttacgttattcttggcatgt-ttttagtcattttcagtcggtttt 274  Q
    |||||||| |||||||||| |||||| ||||||||||||||||| ||||||    
T  24381995 gtcatctttcgttattcttagcatgtattttagtcattttcagtaggtttt 24382045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 254
Target Start/End: Original strand, 28275324 - 28275362
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  28275324 tgatgacaaatcatcttacgttattcttagcatgttttt 28275362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 254
Target Start/End: Original strand, 29380960 - 29380998
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  29380960 tgatgacaggtcatcttacgttattcttagcatgttttt 29380998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 24750925 - 24750864
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgtttttagtcattttcagtcggtttt 274  Q
    ||||||||||| || ||||||| |||||||| ||||||||||  ||||||| ||||| ||||    
T  24750925 ttgtgatgacatgttatcttacattattcttagcatgtttttcttcatttttagtcgttttt 24750864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 26829463 - 26829504
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||| |||||| ||||||||||||||||||| ||||||||||    
T  26829463 ttgtaatgacacgtcatcttacgttattcttagcatgttttt 26829504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 88433 - 88495
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||||||| ||||||||||||||||||| |||||||||| | ||||||||||| ||||||    
T  88433 ttgtgatgacatgtcatcttacgttattcttagcatgtttttcaatcattttcagtaggtttt 88495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 28918288 - 28918226
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||||||| |||| ||||||||||||| |||||||||| ||||||||||||| ||||||    
T  28918288 ttgtgatgacaaatcattttacgttattcttagcatgtttttcagtcattttcagtaggtttt 28918226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 274
Target Start/End: Complemental strand, 17891829 - 17891769
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||||| |||||||||||||||||||  ||||||||| ||||||||||||| ||||||    
T  17891829 gtgatgacatgtcatcttacgttattcttaacatgtttttcagtcattttcagtaggtttt 17891769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 16157084 - 16157143
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||| |||||||||| |||||||| |||||||||| ||||||||||||| ||||||    
T  16157084 tgatgacaggtcatcttacattattcttagcatgtttttcagtcattttcagtaggtttt 16157143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 23010043 - 23010102
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||| ||||||||||||||||||||||| |||||||||| ||||||||||| | ||||||    
T  23010043 tgataacaagtcatcttacgttattcttagcatgtttttcagtcattttcaataggtttt 23010102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 35680100 - 35680159
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||| | ||||||||||||||||| |||||||||| ||||||||||||| ||||||    
T  35680100 tgatgacaggccatcttacgttattcttagcatgtttttaagtcattttcagtaggtttt 35680159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 17351077 - 17351016
Alignment:
Q  214 tgtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||||||||||||||||||||||||||  ||| ||||| ||| ||||||||| ||||||    
T  17351077 tgtgatgacaagtcatcttacgttattcttaacatatttttcagttattttcagtaggtttt 17351016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 18970774 - 18970832
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgtttttagtcattttcagtcggtttt 274  Q
    ||||||||| ||||||||||||||||||| |||| |||| || |||||||||| ||||||    
T  18970774 gtgatgacatgtcatcttacgttattctttgcat-ttttcaggcattttcagtaggtttt 18970832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 26313275 - 26313216
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatg-tttttagtcattttcagtcggtttt 274  Q
    ||||||||||||||||||| |||||||| ||||| |||||| ||| ||||||| ||||||    
T  26313275 tgatgacaagtcatcttacattattcttagcatgttttttaatcaatttcagtaggtttt 26313216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 25537653 - 25537615
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  25537653 tgatgacaggtcatcttacgttattcttagcatgttttt 25537615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 29144732 - 29144694
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  29144732 tgatgacaggtcatcttacgttattcttagcatgttttt 29144694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 43669330 - 43669400
Alignment:
Q  87 gatggaggtattggacaaccatctttcaaaaatacatgaacaaaatgattggcagttcagccaatacacat 157  Q
    |||||||||| ||||||||||||||||||||| | | |||| |||| ||||| | || |||||| ||||||    
T  43669330 gatggaggtagtggacaaccatctttcaaaaaaagaagaacgaaataattgggaattaagccaagacacat 43669400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 18120546 - 18120583
Alignment:
Q  217 gatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  18120546 gatgacatgtcatcttacgttattcttagcatgttttt 18120583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 25532336 - 25532295
Alignment:
Q  213 ttgtgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||| |||||||| ||||||||||||| ||||||||||    
T  25532336 ttgtgatggcaagtcattttacgttattcttagcatgttttt 25532295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 34574611 - 34574551
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatg--tttttagtcattttcagtcggtttt 274  Q
    |||| ||| ||||||||||||||||||| |||||  |||||||| ||||||||| ||||||    
T  34574611 tgattacaggtcatcttacgttattcttagcatgtttttttagttattttcagtaggtttt 34574551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 27732160 - 27732113
Alignment:
Q  88 atggaggtattggacaaccatctttcaaaaatacatgaacaaaatgattgg 138  Q
    ||||||||| |||||||||||||||||||||   | |||||||||||||||    
T  27732160 atggaggtagtggacaaccatctttcaaaaa---aagaacaaaatgattgg 27732113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 254
Target Start/End: Original strand, 20252 - 20290
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  20252 tgatgacaagtcatcttacgttattcttagcatgttttt 20290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 243831 - 243889
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgtttttagtcattttcagtcggtttt 274  Q
    ||||||||  |||||||||||||||||| |||| |||||||||||||| ||| ||||||    
T  243831 tgatgacatatcatcttacgttattcttagcatatttttagtcattttaagtaggtttt 243889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 4874 - 4931
Alignment:
Q  218 atgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||||||||||||||||||||| |||||||||| ||||| ||| ||| ||||||    
T  4874 atgacaagtcatcttacgttattcttagcatgtttttcagtcaattttagtaggtttt 4931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 253224 - 253273
Alignment:
Q  87 gatggaggtattggacaaccatctttcaaaaatacatgaacaaaatgatt 136  Q
    |||||||||| ||||||||||||||||||||| ||| | |||||||||||    
T  253224 gatggaggtagtggacaaccatctttcaaaaaaacaagtacaaaatgatt 253273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 9841114 - 9841057
Alignment:
Q  218 atgacaagtcatcttacgttattcttggcatgt-ttttagtcattttcagtcggtttt 274  Q
    ||||||| ||||||||||||||||||  ||||| ||||||||||||||||| ||||||    
T  9841114 atgacaaatcatcttacgttattcttaacatgtgttttagtcattttcagtaggtttt 9841057  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 274
Target Start/End: Complemental strand, 14641730 - 14641670
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||||| || |||||||||||||||| |||||||||| ||| ||||||||| ||||||    
T  14641730 gtgatgacaggttatcttacgttattcttagcatgtttttcagttattttcagtaggtttt 14641670  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 21687129 - 21687188
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||| ||||||||||||||||||| |||||||||| ||||| ||| ||| ||||||    
T  21687129 tgatgacatgtcatcttacgttattcttagcatgtttttcagtcaattttagtaggtttt 21687188  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 9519831 - 9519777
Alignment:
Q  214 tgtgatgacaagtcatcttacgttattcttggcatg-tttttagtcattttcagt 267  Q
    ||||||||||| ||||||||||||||| || ||||| |||||||| |||||||||    
T  9519831 tgtgatgacaattcatcttacgttatttttagcatgttttttagttattttcagt 9519777  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 11343956 - 11343910
Alignment:
Q  87 gatggaggtattggacaaccatctttcaaaaatacatgaacaaaatg 133  Q
    |||||||||||| |||| || |||||||||||||| |||||||||||    
T  11343956 gatggaggtattcgacacccgtctttcaaaaatacgtgaacaaaatg 11343910  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 22564558 - 22564608
Alignment:
Q  225 gtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||| ||||||    
T  22564558 gtcatcttacgttattcttagcatgtttttcagtcatttttagtaggtttt 22564608  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 7543157 - 7543116
Alignment:
Q  214 tgtgatgacaagtcatcttacgtta-ttcttggcatgttttt 254  Q
    ||||||||||||||||||||||||| ||||| ||||||||||    
T  7543157 tgtgatgacaagtcatcttacgttatttcttagcatgttttt 7543116  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 17379461 - 17379498
Alignment:
Q  217 gatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  17379461 gatgacaattcatcttacgttattcttagcatgttttt 17379498  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 274
Target Start/End: Complemental strand, 1636731 - 1636671
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    |||||||||  |||||||||||||||||| |||||||||| ||| ||||| ||| ||||||    
T  1636731 gtgatgacagatcatcttacgttattcttagcatgtttttcagttatttttagtaggtttt 1636671  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 9897868 - 9897920
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatg-tttttagtcattttcagt 267  Q
    |||||||| ||||||||||||  ||||| ||||| ||||||||||||||||||    
T  9897868 tgatgacatgtcatcttacgtcgttcttagcatgatttttagtcattttcagt 9897920  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 14076493 - 14076441
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcat-gtttttagtcattttcagt 267  Q
    |||||||| ||||||||||||||||||| |||| ||||| ||| |||||||||    
T  14076493 tgatgacaggtcatcttacgttattcttagcatggttttcagttattttcagt 14076441  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 274
Target Start/End: Complemental strand, 14727232 - 14727172
Alignment:
Q  215 gtgatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggtttt 274  Q
    ||||||||| |||||||||||||||| ||  ||||||||| ||||||||| ||| ||||||    
T  14727232 gtgatgacaggtcatcttacgttattattaccatgtttttcagtcatttttagtaggtttt 14727172  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 24469894 - 24469834
Alignment:
Q  217 gatgacaagtcatcttacgttattcttggcatgttttt-agtcattttcagtcggttttga 276  Q
    ||||||| |||||||||||||||| || | |||||||| | ||||||||||| ||||||||    
T  24469894 gatgacaggtcatcttacgttatttttagtatgtttttcaatcattttcagtaggttttga 24469834  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 24480121 - 24480061
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgt-ttttagtcattttcagtcggttttg 275  Q
    |||||| | ||||||||||||||||||| |||||| ||| | ||||||||||| |||||||    
T  24480121 tgatgataggtcatcttacgttattcttagcatgtatttcaatcattttcagtaggttttg 24480061  T

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Target: scaffold0032 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 254
Target Start/End: Original strand, 92828 - 92866
Alignment:
Q  216 tgatgacaagtcatcttacgttattcttggcatgttttt 254  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  92828 tgatgacaagttatcttacgttattcttagcatgttttt 92866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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