View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_low_45 (Length: 253)
Name: NF2512_low_45
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 57 - 237
Target Start/End: Original strand, 34412285 - 34412459
Alignment:
| Q |
57 |
gatagtaactttctcctatttggaatgctgagaaagaaagagagaagagacactaaaaaattatggggcccactgctttttgttttctccacaaaataga |
156 |
Q |
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| T |
34412285 |
gatagtaactttctcctgtttgaaatgcagagaa----agagagaagagagactaaaaaactgtgggacccactgctttttgttttctccacaaaacaga |
34412380 |
T |
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| Q |
157 |
gaagaaatgggagagagagaagtgtcttatttttgttgttccatttttacccttgtatttgaatttcatttatgatttatt |
237 |
Q |
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| T |
34412381 |
gaagaaatgg--gagagagaagggtcatatttttgttattccatttttacccttgtatttgaatttcatttatgacttatt |
34412459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 35105480 - 35105622
Alignment:
| Q |
91 |
agaaagagagaagagacactaaaaaattatggggcccactgctttttgttttctccacaaaatagagaagaaatgggagagagagaagtgtcttattttt |
190 |
Q |
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| T |
35105480 |
agaaagagggaagagagactaaaaatatgtggggcccacaactttttgttttctccacaaaacagagaagaaacgg--gagagagaagtgtcttaattct |
35105577 |
T |
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| Q |
191 |
gttgttccatttttacccttgtatttgaatttcatttatgattta |
235 |
Q |
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| T |
35105578 |
gttgttccgtttttacccctacattcaaattgcatttatgattta |
35105622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 237
Target Start/End: Complemental strand, 38675149 - 38674982
Alignment:
| Q |
64 |
actttctcctatttggaatgctgagaaagaaagagagaagagacactaaaaaattatggggcccactgctttttgttttctcc-acaaaatagagaagaa |
162 |
Q |
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| T |
38675149 |
actttctcctatttggaatgcagagaaaga----gagaagagagactaaaaatttgtgggacccactgctttttgttttctccgcctgaacagcgaagag |
38675054 |
T |
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| Q |
163 |
atgggagagagagaagtgtcttatttttgttgttccatttttacccttgtatttgaatttcatttatgatttatt |
237 |
Q |
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| T |
38675053 |
acgggagagaggga--tggcttaattttgttgttccatttttaccctt-tattgaaattttatttatgatttatt |
38674982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 238
Target Start/End: Complemental strand, 22644613 - 22644436
Alignment:
| Q |
61 |
gtaactttctcctatttggaatgctgagaaagaaagagagaagagacactaaaaaattatggggcccactgctttttgttttctccacaaaatagagaag |
160 |
Q |
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|||| |||||| |||||||||||| ||| ||||| |||||||| |||||||| || || | |||| ||||||||||||||||| | | | |||| |
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| T |
22644613 |
gtaaatttctcttatttggaatgc----aaaaaaagatagaagagagactaaaaatttgtgagacccagtgctttttgttttctcctcttcacatcgaag |
22644518 |
T |
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| Q |
161 |
aaa----tgggagagagagaagtgtcttatttttgttgttccatttttacccttgtatttgaatttcatttatgatttattt |
238 |
Q |
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| T |
22644517 |
aaacaggagagagagagagaggtgccttaattttggtgttccatttttacccttgtattcatatttcatttatgatttattt |
22644436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 33614830 - 33614761
Alignment:
| Q |
169 |
gagagagaagtgtcttatttttgttgttccatttttacccttgtatttgaatttcatttatgatttattt |
238 |
Q |
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| T |
33614830 |
gagagagaggtatcttaattttggtgttccatttttacccatgtattcatatttcatttatgatttattt |
33614761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 52796581 - 52796623
Alignment:
| Q |
132 |
ctttttgttttctccacaaaatagagaagaaatgggagagaga |
174 |
Q |
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| T |
52796581 |
ctttttggtttctcctcacaatagagaagaaatgggagagaga |
52796623 |
T |
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