View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2512_low_54 (Length: 246)

Name: NF2512_low_54
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2512_low_54
NF2512_low_54
[»] chr6 (7 HSPs)
chr6 (132-222)||(25524764-25524854)
chr6 (132-222)||(25516543-25516633)
chr6 (132-209)||(26047219-26047296)
chr6 (132-209)||(26049244-26049321)
chr6 (132-209)||(26065528-26065605)
chr6 (132-209)||(26070413-26070490)
chr6 (132-209)||(26085497-26085574)
[»] chr4 (3 HSPs)
chr4 (57-103)||(23499443-23499489)
chr4 (42-98)||(29391162-29391218)
chr4 (42-103)||(9521884-9521945)
[»] chr7 (3 HSPs)
chr7 (42-103)||(19267374-19267435)
chr7 (51-103)||(30969761-30969813)
chr7 (42-103)||(38603007-38603068)
[»] chr8 (1 HSPs)
chr8 (57-103)||(39421528-39421574)
[»] chr2 (1 HSPs)
chr2 (42-105)||(35112498-35112560)
[»] chr1 (1 HSPs)
chr1 (51-103)||(3279409-3279461)


Alignment Details
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 25524764 - 25524854
Alignment:
Q  132 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcg 222  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||| |||| || ||||||||| ||||||||||||    
T  25524764 ctgctatttttccctctcctgatttcttccttcccctctcatgtctcacatatcgtctccctccacctctttttctgtctgtgattgttcg 25524854  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 25516543 - 25516633
Alignment:
Q  132 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcg 222  Q
    ||||||||||||||| |||||| ||||||||||| |||| ||||||||| |||||||||| ||||||| ||||||||| | ||||||||||    
T  25516543 ctgctatttttccctttcctgatttctcccttccactctcatgtctcacttatcatctccctccatctctttttctgtctttgattgttcg 25516633  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 26047219 - 26047296
Alignment:
Q  132 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgt 209  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| |||||||||    
T  26047219 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctgt 26047296  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 26049244 - 26049321
Alignment:
Q  132 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgt 209  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| |||||||||    
T  26049244 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctgt 26049321  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 26065528 - 26065605
Alignment:
Q  132 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgt 209  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| |||||||||    
T  26065528 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctgt 26065605  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 26070413 - 26070490
Alignment:
Q  132 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgt 209  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| |||||||||    
T  26070413 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctgt 26070490  T

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Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 26085497 - 26085574
Alignment:
Q  132 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgt 209  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| |||||||||    
T  26085497 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctgt 26085574  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 23499489 - 23499443
Alignment:
Q  57 gtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 103  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  23499489 gtaaagtgagaaaattaagggttgttattttaacaaactcatgattt 23499443  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 29391162 - 29391218
Alignment:
Q  42 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcat 98  Q
    |||| ||||||||| ||||||| |||||| | |||||||||||| ||||||||||||    
T  29391162 taaagtgagtaaagtgtaaagtaagaaaattgagggttgttattgtaacaaactcat 29391218  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 9521945 - 9521884
Alignment:
Q  42 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 103  Q
    |||| ||| ||||| ||||||||||||||  || |||||| | |||||||||||||||||||    
T  9521945 taaagtgactaaagtgtaaagtgagaaaatcaaaggttgtcaatttaacaaactcatgattt 9521884  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 19267435 - 19267374
Alignment:
Q  42 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 103  Q
    |||| ||||||||| ||||| ||||||||  |||||||||||||||||||||||||||||||    
T  19267435 taaagtgagtaaagtgtaaattgagaaaatcaagggttgttattttaacaaactcatgattt 19267374  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 30969761 - 30969813
Alignment:
Q  51 taaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 103  Q
    ||||| ||||||||||||||  ||||||||||||| |||||||||||||||||    
T  30969761 taaagtgtaaagtgagaaaatcaagggttgttattgtaacaaactcatgattt 30969813  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 38603007 - 38603068
Alignment:
Q  42 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 103  Q
    |||| ||||| ||| ||||||  ||||||  |||||||||||||||||||||||||||||||    
T  38603007 taaagtgagtgaagtgtaaagcaagaaaatcaagggttgttattttaacaaactcatgattt 38603068  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 39421528 - 39421574
Alignment:
Q  57 gtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 103  Q
    ||||||||||||||  || ||||||||||||||||||||||||||||    
T  39421528 gtaaagtgagaaaatcaaaggttgttattttaacaaactcatgattt 39421574  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 35112498 - 35112560
Alignment:
Q  42 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattttt 105  Q
    |||||||  ||||| |||||||||||||| |||||||||||||| |||||| ||||| ||||||    
T  35112498 taaattggttaaagtgtaaagtgagaaaa-taagggttgttattataacaagctcataattttt 35112560  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 3279409 - 3279461
Alignment:
Q  51 taaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 103  Q
    ||||| ||||||||||||||  |||||||||| ||| |||||||| |||||||    
T  3279409 taaagtgtaaagtgagaaaatgaagggttgttttttaaacaaacttatgattt 3279461  T

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