View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_low_55 (Length: 244)
Name: NF2512_low_55
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_55 |
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| [»] scaffold0450 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold0450 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 11568 - 11337
Alignment:
| Q |
18 |
agagtcttgttcgttttgctgctagacttggaacatcgtatttatactaatattatttattnnnnnnnnnnnnnn----ttgatgtgttaaaggtctatg |
113 |
Q |
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| T |
11568 |
agagtcttgttcgttatgatgatagacttggaacatcgtatttatactaatattatttattaaaaataaaaaacaaaaattgatgtgttaaaggtccatg |
11469 |
T |
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| Q |
114 |
gtttgaattctgggnnnnnnnnn-ctaacataacaattaacatacttaaatttgtcattggaaacaaaaactctcccttatggctcaactttcgtatcaa |
212 |
Q |
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| T |
11468 |
gtttaaattctggataaaaagaaactaacataataattaacatactaaaatttgtcattggataaaaaaactctcccttatagctcaactttcttatcag |
11369 |
T |
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| Q |
213 |
aagttttattgaagtcctatattgctcaaggt |
244 |
Q |
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| T |
11368 |
aagttttattgaagtccaatattactcaaggt |
11337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 23666211 - 23666443
Alignment:
| Q |
18 |
agagtcttgttcgttttgctgctagacttggaacatcgtatttatactaatattatttattnnnnnnnnnnnnnn-----ttgatgtgttaaaggtctat |
112 |
Q |
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| T |
23666211 |
agagtcttgttcgttatgatgctagacttggaacatcgtatttatactaatattatttatttaaaaaaaaaaaacaaaaattgatgtgttaaaggtccat |
23666310 |
T |
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| Q |
113 |
ggtttgaattctgggnnnnnnnnn-ctaacataacaattaacatacttaaatttgtcattggaaacaaaaactctcccttatggctcaactttcgtatc- |
210 |
Q |
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| T |
23666311 |
ggtttgaattctggaaaaaaagaaactaacataataattaacatactaaaatttgtcattggtaa-aaaaactctcccttatgacacaactttcttatca |
23666409 |
T |
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| Q |
211 |
aaaagttttattgaagtcctatattgctcaaggt |
244 |
Q |
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| T |
23666410 |
aaaagttttattgaagcccgatattgctcaaggt |
23666443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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