View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_low_56 (Length: 241)
Name: NF2512_low_56
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 29837974 - 29837754
Alignment:
| Q |
1 |
agcctgaagaagattagcgagcgttgaaccacctgaagatgaaatcaaacgacacagatgcatcaataaattacaacacaacttatatatcatagaataa |
100 |
Q |
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| T |
29837974 |
agcctgaagaagattagcgagcgttgaaccacctgaagatgaaatcacacgacaccgatgcatcaataaattacaacacaacttatatatcatagaataa |
29837875 |
T |
|
| Q |
101 |
ttttacctttgctaaaaaactaaccatgttgagtaacactttttctttttgttcttgtaattgtaggtccttcttggctagccattacaactatacgcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29837874 |
ttttacctttgctaaaaaactaaccatgttgagtaacactttttctttttgttcttgtaattgtaggtccttcttggctagccattacaactatacgcgt |
29837775 |
T |
|
| Q |
201 |
tctaagagcagatagccgttc |
221 |
Q |
| |
|
|||||||||||||| |||||| |
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| T |
29837774 |
tctaagagcagatatccgttc |
29837754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 34628690 - 34628785
Alignment:
| Q |
119 |
actaaccatgttgagtaacactttttctttttgttcttgtaattgtaggtccttcttggctagccattacaactatacgcgttctaagagcagata |
214 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||||| |||||||||||||||| |
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| T |
34628690 |
actaaccatgttgagttgcactttttctttttgttcttgtaattgtaggaccttcttgaccagccattacaacgatacgagttctaagagcagata |
34628785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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