View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_low_58 (Length: 239)
Name: NF2512_low_58
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2809413 - 2809190
Alignment:
| Q |
1 |
gctcattatcattcatttatcatatcaaccatatctaataatatgtttgttcggcattcatctattctttcttgcgtttcaagtcagtttcaacgtgaat |
100 |
Q |
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| T |
2809413 |
gctcattatcattcatttatcatatcaaccatatctaataatatgtttgttcggcattcatctattctttcttgcgtttcaagtcagtttcaacgtgaat |
2809314 |
T |
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| Q |
101 |
attgagaagctacaaattgttggttcaaagtggacacacgccgtcaaaacaaacatatactaatctgatcaaacaacacatacccatgtgacaatagact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2809313 |
attgagaagctacaaattgttggttcaaagtggacacacgccgtcaaaacaaacatatactaatctgatcaaacaacacatacccatgtgacaatagact |
2809214 |
T |
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| Q |
201 |
ggcattgagatggtgtaagttttt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
2809213 |
ggcattgagatggtgtaagttttt |
2809190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4273317 - 4273107
Alignment:
| Q |
1 |
gctcattatcattcatttatcatatcaaccatatctaataatatgtttgttcggcattcatctattctttcttgcgtttcaagtcagtttcaacgtgaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4273317 |
gctcattatcattcatttatcatatcaaccatatctaataatatgtttgttcggcattcatctattctttcttgtgtttcaagtcagtttcaacgtgaat |
4273218 |
T |
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| Q |
101 |
attgagaagctacaaattgttggttcaaagtggacacacgccgtcaaaacaaacatatactaatctgatcaaacaacacatacccatgtgacaatagact |
200 |
Q |
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| T |
4273217 |
attgagaagcta-------------caaagtggacacacgccgtcaaaacaaacatatactaatcagatcaaacaacacatacccatgtgacaatagact |
4273131 |
T |
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| Q |
201 |
ggcattgagatggtgtaagttttt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
4273130 |
ggcattgagatggtgtaagttttt |
4273107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 21628271 - 21628238
Alignment:
| Q |
87 |
gtttcaacgtgaatattgagaagctacaaattgt |
120 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
21628271 |
gtttcaacgtgaatattgagaagctacatattgt |
21628238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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