View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2512_low_65 (Length: 233)
Name: NF2512_low_65
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_65 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 41 - 230
Target Start/End: Original strand, 54074441 - 54074630
Alignment:
| Q |
41 |
ttttcactcatatagaacatatgaatatgaaaccttcttcaccatcagattccaatatttccattaacaattcaacaaaaacattcattagtagtccttg |
140 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54074441 |
ttttcactcatatagaaaatatgaatatgaaaccttcttcaccatcagattccaatatttccattaacaattcaacaacaacattcattagtagtccttg |
54074540 |
T |
|
| Q |
141 |
ggaaaccatgcgacgaaaaccacgaacaaccctccttctttcattactttctattcttttatttgctgcattttctcttcatctcactcg |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
54074541 |
ggaaaccatgcgacgaaaaccacgaacaaccctccttctttcattactttctattcttttatttgctgcattttctcttcatctctctcg |
54074630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University