View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2512_low_66 (Length: 229)
Name: NF2512_low_66
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_66 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 14035568 - 14035772
Alignment:
| Q |
8 |
actactttcatccacacttttgttattggttttgttttgttcatgaactctatatcattatgtgaattaggcatagagtaagaacgaaaacatcattgtt |
107 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14035568 |
actactttcatccacacttttgttcttggttttgttttgttcatgaactctatatcattatgtgaattaggcatagagtcagaacgaaaacatcattgtt |
14035667 |
T |
|
| Q |
108 |
aagtgaatgagtggttaagagaattgatttcaaaagaattggaaaaacattataaaaggaagattattacttcctactctaatctattctcgcgcgtcct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
14035668 |
tagtgaatgagtggttaagagaattgatttcaaaagaattggaaaaacattataaaaggaagattattacttcctactctaatctaat-tcgcgcgtcct |
14035766 |
T |
|
| Q |
208 |
ataaaa |
213 |
Q |
| |
|
|||||| |
|
|
| T |
14035767 |
ataaaa |
14035772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 14037309 - 14037471
Alignment:
| Q |
14 |
ttcatccacacttttgttattggttttgttttgttcatgaactctatatcattatgtgaattaggcatagagtaagaacgaaaa-catcattgttaagtg |
112 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
14037309 |
ttcatccacacttttgttcttgaatttgttttgttcttgaactctatatcagtatgtgaactaggcatagagtctgaacgaaaaacatcattgttaagtg |
14037408 |
T |
|
| Q |
113 |
aatgagtggttaagagaattgatttcaaaagaattggaaaaacattataaaaggaagattatt |
175 |
Q |
| |
|
||||||||||||| |||||||||||| ||| |||||| |||| ||||||||||||||||||| |
|
|
| T |
14037409 |
aatgagtggttaaaagaattgatttccaaaaaattgggaaaattttataaaaggaagattatt |
14037471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University