View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_low_72 (Length: 213)
Name: NF2512_low_72
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_72 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 36283183 - 36283002
Alignment:
| Q |
15 |
atgaagagaattagtaagtgtccaaagagaaacccacctacgtgacaaaacactagtagcaatagcttcttttgttggtaggaatgaaaggatattagca |
114 |
Q |
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| T |
36283183 |
atgaagagaattagtaagtgtccaaagagaaacccacctacgtgacaaaacactagtagcaatagcttcttttgttggtaggaatgaaaggatattagca |
36283084 |
T |
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| Q |
115 |
agtacttcattgtgtaaactactgatcctatcaacttgttcttctagttctagttttattttggccatgcaagggttttaat |
196 |
Q |
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| T |
36283083 |
agtacttcattgtgtaaactactgatcctatcaacttgttcttctagttctagttttcttttggccatgcaagggttttaat |
36283002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 34553888 - 34553770
Alignment:
| Q |
34 |
gtccaaagagaaacccacctacgtgacaaaacactagtagcaatagcttcttttgttggtaggaatgaaaggatattagcaagtacttcattgtgtaaac |
133 |
Q |
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| T |
34553888 |
gtccaaagtgaaatccacctatgggataaaacacttgttgtgatagcatctttggttggtaggaatgaaaggatataagcaattacctcatttggtaatc |
34553789 |
T |
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| Q |
134 |
tactgatcctatcaacttg |
152 |
Q |
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| T |
34553788 |
tactgatcctatcaacttg |
34553770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 29914750 - 29914631
Alignment:
| Q |
37 |
caaagagaaacccacctacgtgacaaaacactagtagcaatagcttcttttgttggtaggaatgaaaggatattagcaagtacttcatt-----gtgtaa |
131 |
Q |
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| T |
29914750 |
caaagagaaacacacctacgtgacaaaacactagtttcaatagcttcttttgttgctaggaatgaaagaattttagcaagtacttcatttcctcatgtaa |
29914651 |
T |
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| Q |
132 |
actactgatcctatcaactt |
151 |
Q |
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||||||||| |||||||||| |
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| T |
29914650 |
actactgatactatcaactt |
29914631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 29963903 - 29963784
Alignment:
| Q |
37 |
caaagagaaacccacctacgtgacaaaacactagtagcaatagcttcttttgttggtaggaatgaaaggatattagcaagtacttcatt-----gtgtaa |
131 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| || ||||||||||||||||| ||||| |
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| T |
29963903 |
caaagagaaacacacctacgtgacaaaacactagtttcaatagcttcttttgttgctaggaatgaaagaattttagcaagtacttcatttcctcatgtaa |
29963804 |
T |
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| Q |
132 |
actactgatcctatcaactt |
151 |
Q |
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||||||||| |||||||||| |
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| T |
29963803 |
actactgatactatcaactt |
29963784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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