View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2512_low_8 (Length: 584)
Name: NF2512_low_8
Description: NF2512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2512_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 10 - 568
Target Start/End: Original strand, 35179442 - 35180000
Alignment:
| Q |
10 |
attatactactcctagagtcataaaaaggaaaatatactgaagcatctaattgcactaataaacaaaacattaaaaaacaactatgatgtggatttaagg |
109 |
Q |
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| T |
35179442 |
attatactactcctagagtcataaaaaggaaaatataccgaagcatctaattgcactaataaacaaaacattaaaaaacaactatgatgtggatttaagg |
35179541 |
T |
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| Q |
110 |
ttaagaaacatactcattgaataaagcatgaatatcaagatcattttctcgcagtttcggtccagtactataccaacccacaacatgctccttagctacn |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35179542 |
ttaagaaacatactcattgaataaagcatgaatatcaagatcattttctcgcagtttcggtccagtactataccaccccacaacatgctccttagctaca |
35179641 |
T |
|
| Q |
210 |
nnnnnncaaaccaacaacaatcattcaccatctttaattacatcaaatttccaatcataacaaatattcaaacgttttaaccaacaataatctttcatac |
309 |
Q |
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| T |
35179642 |
aaaaaacaaaccaacaacaatcattcaccatctctaattacatcaaatttccaatcataacaaatattcaaacgttttaaccaacaataatctttcatac |
35179741 |
T |
|
| Q |
310 |
cattgattctcttgaacatagagaacattgattcatgataattatgatcaagaaaccaaatgctaggatccttatcatcttcctcaaacggcactgtcaa |
409 |
Q |
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| T |
35179742 |
cattgattctcttgaacatagagaacattgattcatgataattatgatcaagaaaccaaatgctaggatccttatcatcttcctcaaacggcactgtcaa |
35179841 |
T |
|
| Q |
410 |
aaaacacataaccaaaaagctattaacacacttctgattaaaggtgcatgcgatactgacacatgtaattacattgaattatgaaaattgaaattgaaaa |
509 |
Q |
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| T |
35179842 |
aaaacacataaccaaaaagctattaacacacttctgattaaaggtgcatgcgatactgacacatgtaattacattgaattatgaaaattgaaattgaaaa |
35179941 |
T |
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| Q |
510 |
ttgtaccagcgtagctgttggtgatatcgacggtgcctttgaaagaggaaccaagaagc |
568 |
Q |
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| T |
35179942 |
ttgtaccagcgtagctgttggtgatatcgacggtgcctttgaaagaggaaccaagaagc |
35180000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 406
Target Start/End: Original strand, 31444648 - 31444750
Alignment:
| Q |
304 |
tcataccattgattctcttgaacatagagaacattgattcatgataattatgatcaagaaaccaaatgctaggatccttatcatcttcctcaaacggcac |
403 |
Q |
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| T |
31444648 |
tcataccatttattctcttaaacatggaaaacattgcttcgtgataattgtggtcgagaaaccaaatgctggggtccttgtcatcttcttcaaaaggcac |
31444747 |
T |
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| Q |
404 |
tgt |
406 |
Q |
| |
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||| |
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| T |
31444748 |
tgt |
31444750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 31444486 - 31444573
Alignment:
| Q |
115 |
aaacatactcattgaataaagcatgaatatcaagatcattttctcgcagtttcggtccagtactataccaacccacaacatgctcctt |
202 |
Q |
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| T |
31444486 |
aaacatactcattaaataacccatgaatgtcgaggtcattttctcgcagctttggaccagtgctataccaccccaccacatgctcctt |
31444573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 492
Target Start/End: Original strand, 12843179 - 12843207
Alignment:
| Q |
464 |
actgacacatgtaattacattgaattatg |
492 |
Q |
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| T |
12843179 |
actgacacatgtaattacattgaattatg |
12843207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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