View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2513_high_10 (Length: 324)
Name: NF2513_high_10
Description: NF2513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2513_high_10 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 80 - 324
Target Start/End: Original strand, 40758613 - 40758857
Alignment:
| Q |
80 |
tccaaataatattgaaagctaggtgagatttattggagaagctagagttcgactcatcttggtgacgataatttttgtgagtcatttcatatatataggg |
179 |
Q |
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| T |
40758613 |
tccaaataatattgaaagctaggtgagatttattggagaagctagagttcgactcatcttggtgccgataatttttgtgagtcatttcatatatataggg |
40758712 |
T |
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| Q |
180 |
gctttaatttgctctaaccttaatatattgagctctccgccggtggatagtgagattagcgtcctctccaaatattatgtttgaatcatccgataaccnn |
279 |
Q |
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| T |
40758713 |
gctttaatttgctctaaccttaatatattgagctctccgccggtggatagtgagattagcgtcctctccaaatattatgttcgaatcatccgataaccaa |
40758812 |
T |
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| Q |
280 |
nnnnntttgttctaacttcaattagacatggtgagattgatacct |
324 |
Q |
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| T |
40758813 |
gaattttcgttctaacttcaattagacatggtgagattgatacct |
40758857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 40758568 - 40758624
Alignment:
| Q |
11 |
ttatactctcagccttatggcgaaatattcttctgttatgttcctttcaaatgatat |
67 |
Q |
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| T |
40758568 |
ttatactctcagccttatggcgtaatattcttctattctgttccttccaaataatat |
40758624 |
T |
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