View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2513_high_12 (Length: 294)
Name: NF2513_high_12
Description: NF2513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2513_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 8520471 - 8520196
Alignment:
| Q |
1 |
ctaaattttgatgttgcagctactgcctgaatgttatatattatcctataagaagtctatatataggatctacaactgacaagagcagcctgctataata |
100 |
Q |
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| T |
8520471 |
ctaaattttgatgttgcagctactgcctgaatgttatatattatcctataagaagtctatatataggatctgcaactgacaagagcagcctgctataata |
8520372 |
T |
|
| Q |
101 |
tgaagatgataatgcattttgtcatactaatccaaccagcttgatttaatatgacatgaacagatcctataatgcattttatcttgtatttcattgttga |
200 |
Q |
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| T |
8520371 |
tgaagatgataatgcattttgtcatactaatccaaccagcttgatttaatatgacatgaacagatcctataatgcattttatcttgtatttcattgttga |
8520272 |
T |
|
| Q |
201 |
atttctctatttgtcattcttctgcttgtcgagtggtcctgggttttcctttcatttctacagcttttgtaaaatt |
276 |
Q |
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| T |
8520271 |
atttctctatttgtcattcttttgcttgtcgagtggtcctgggttttcctttcatttctacagcttttgtaaaatt |
8520196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 31 - 276
Target Start/End: Complemental strand, 18760100 - 18759849
Alignment:
| Q |
31 |
atgttatatattatcctataagaagtctatatataggatctac--------aactgacaagagcagcctgctataat-atgaagatgataatgcattttg |
121 |
Q |
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| T |
18760100 |
atgttatatattatcctataagaagtttatatataggatctgccgatctgcaactgacaagagcagtctgctaaaaacatgaagatgataatgtatttta |
18760001 |
T |
|
| Q |
122 |
tcatactaatccaaccagcttgatttaatatgacatgaacagatcctataatgcattttatcttgtatttcattgttgaatttctctatttgtcattctt |
221 |
Q |
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| T |
18760000 |
tcatacccattgatctatcctgctttaatatgacatgaacagatcctataatgcattttatcttgtatttcattgctgaaattctctatttgtca--ctt |
18759903 |
T |
|
| Q |
222 |
ctgcttgtcgagtggtcctgggttttcctttcatttctacagcttttgtaaaatt |
276 |
Q |
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| T |
18759902 |
atgcttgctgactggtcttggg-cttcctttcatttctacaacttttgtcaaatt |
18759849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 31 - 276
Target Start/End: Original strand, 10981553 - 10981804
Alignment:
| Q |
31 |
atgttatatattatcctataagaagtctatatataggatctac--------aactgacaagagcagcctgctataat-atgaagatgataatgcattttg |
121 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |||||| || ||||||||||||||| ||||| |
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| T |
10981553 |
atgttatatattatcctataagaagtttatatataggatctgccgatctgcaactgacaagagcagtctgctaaaaacatgaagatgataatgtatttta |
10981652 |
T |
|
| Q |
122 |
tcatactaatccaaccagcttgatttaatatgacatgaacagatcctataatgcattttatcttgtatttcattgttgaatttctctatttgtcattctt |
221 |
Q |
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| T |
10981653 |
tcatacccattgatctatcctgctttaatatgacatgaacagatcctataatgcattttatcttgtatttcattgctgaaattctctatttgtca--ctt |
10981750 |
T |
|
| Q |
222 |
ctgcttgtcgagtggtcctgggttttcctttcatttctacagcttttgtaaaatt |
276 |
Q |
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| T |
10981751 |
atgcttgctgactggtcttagg-cttcctttcatttctacaacttttgtaaaatt |
10981804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 11524472 - 11524352
Alignment:
| Q |
5 |
attttgatgttgcagctactgcctgaatgttatatattatcctataagaagtctatatataggatctacaactgacaagagcagcctgctataatatgaa |
104 |
Q |
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||||||||| |||||||| |||||| | || | |||||||||| |||||||||| ||||||||| || ||||| ||| |||||||||||||||||||||| |
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| T |
11524472 |
attttgatgctgcagctagtgcctgcaagtaagatattatcctgtaagaagtctgtatataggagctgcaactaacatgagcagcctgctataatatgaa |
11524373 |
T |
|
| Q |
105 |
gatgataatgca-ttttgtca |
124 |
Q |
| |
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|| ||||||||| |||||||| |
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| T |
11524372 |
gaagataatgcagttttgtca |
11524352 |
T |
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