View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2513_high_14 (Length: 290)
Name: NF2513_high_14
Description: NF2513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2513_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 4277871 - 4277967
Alignment:
| Q |
11 |
cataggaccgacaaaatcctccctcaagaaattccatattgttgcattctcataattcgattgcaatacaaaacatttggttaagttgaaagtgata |
107 |
Q |
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| T |
4277871 |
cataagactgacaaaatcctccctcaagaaattccatattgttgcattctcataattcgattgcaatacaaaacatttggttaagctgaaagtgata |
4277967 |
T |
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Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 4278045 - 4278135
Alignment:
| Q |
185 |
aaattagagaaagggtataaccgcgtacacgctaaagatcccatcataaaatataagcatcaacnnnnnnnncttgtcatagattatatat |
275 |
Q |
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| T |
4278045 |
aaattagagaaagggtataaccgcgtacacactaaagatcccatcataaaataaaagcatcaacttttttttcttgtcatagattatatat |
4278135 |
T |
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