View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2513_high_16 (Length: 276)
Name: NF2513_high_16
Description: NF2513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2513_high_16 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 6897516 - 6897773
Alignment:
| Q |
1 |
tgagaatggatggcaacaaaagagaacggtttcaggtcacatgtaagcggtctgaaacaccattgtaacttatatcacaaacactgtgtactgttcaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| ||||||||||| |
|
|
| T |
6897516 |
tgagaatggatggcaacaaaagagcatggtttcaggtcacatgtaagcggtctgaaacaccattgttacatatatcacaaacaccgtgcactgttcaaca |
6897615 |
T |
|
| Q |
101 |
taaaagatagtatcttatgaataatttttactatttaagagaaatattactaatgtttgacaagtataaacagattggtgaatgtggtgcacctggctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6897616 |
taaaagatagtatcttatgaataatttttactatgtaagagaaaatatactaatgtttgacaagtataaacagattggtgaatgtggtgcacctggctat |
6897715 |
T |
|
| Q |
201 |
aataacatctcatctcagccgccaatcaggaaattgtcacatcaggaatgtgactaat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6897716 |
aataacatctcatctcagccgccaatcaggaaattgtcacatcaggaatgtgactaat |
6897773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 6879944 - 6880201
Alignment:
| Q |
1 |
tgagaatggatggcaacaaaagagaacggtttcaggtcacatgtaagcggtctgaaacaccattgtaacttatatcacaaacactgtgtactgttcaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||||||| |||| | ||||| ||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
6879944 |
tgagaatggatggcaacaaaagagcatggtttcaggtcacatgtaagcggtcagaaagagcattgcaacatatatcacaaacaccgtgcactgttcaaca |
6880043 |
T |
|
| Q |
101 |
taaaagatagtatcttatgaataatttttactatttaagagaaatattactaatgtttgacaagtataaacagattggtgaatgtggtgcacctggctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6880044 |
taaaagatagtatcttatgaataatttttactatttaagagaaaatatactaatgtttgacaagtataaacagattgggaaatgtggtgcacctggctac |
6880143 |
T |
|
| Q |
201 |
aataacatctcatctcagccgccaatcaggaaattgtcacatcaggaatgtgactaat |
258 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6880144 |
aataacatctcatctcagccgcctatcaggaaattgtcacatcaggaatgtgactaat |
6880201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 6235475 - 6235727
Alignment:
| Q |
1 |
tgagaatggatggcaacaaaagagaacggtttcaggtcacatgtaagcggtctgaaacaccattgtaacttatatcacaaacactgtgtactgttcaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |||||||||| || ||| ||||||||||| |
|
|
| T |
6235475 |
tgagaatggatggcaacaaaagagaacggtttcaggtcacatgtaagcggtcagaaacgccattgaaacatatatcacaacaaccgtgcactgttcaaca |
6235574 |
T |
|
| Q |
101 |
taaaagatagtatcttatgaataatttttactatttaagagaaatattactaatgtttgacaagtataaacagattggtgaatgtggtgcacctggctat |
200 |
Q |
| |
|
||||| | |||| | || || ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6235575 |
taaaacacagtaggctgtgcattatttttactatttaaaagaaaatttactaatgtttgacaagtataaacagattgggaaatgtggtgcacctggctac |
6235674 |
T |
|
| Q |
201 |
aataacatctcatctcagccgccaatcaggaaattgtcacatcaggaatgtga |
253 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
6235675 |
aataacatctcatctcagctgccaatcaggaaattgtcacataaggaatgtga |
6235727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 90 - 258
Target Start/End: Complemental strand, 6851570 - 6851402
Alignment:
| Q |
90 |
actgttcaacataaaagatagtatcttatgaataatttttactatttaagagaaatattactaatgtttgacaagtataaacagattggtgaatgtggtg |
189 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
6851570 |
actgttcaacataaaagatagtatctaatgaataatttttactatctaagagaaaatatactaatgtttgacaagtataaacagactgggaaatgtggtg |
6851471 |
T |
|
| Q |
190 |
cacctggctataataacatctcatctcagccgccaatcaggaaattgtcacatcaggaatgtgactaat |
258 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6851470 |
cacctggctacaataacatctcatctcagccgccaatcaggaaattgtcacatcaggaatgtgactaat |
6851402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 6242750 - 6242998
Alignment:
| Q |
1 |
tgagaatggatggcaacaaaagagaacggtttcaggtcacatgtaagcggtctgaaacaccattgtaacttatatcacaaacactgtgtactgttcaaca |
100 |
Q |
| |
|
||||||||||| ||||||| |||| | ||||||||||||||||||||| ||| |||||||||||| ||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
6242750 |
tgagaatggatcgcaacaagagagcatggtttcaggtcacatgtaagcagtcagaaacaccattgaaacatatatcacaaacacagtgcactgttcaaca |
6242849 |
T |
|
| Q |
101 |
taaaagatagtatcttatgaataatttttactatttaagagaaatattactaatgtttgacaagtataaacagattggtgaatgtggtgcacctggctat |
200 |
Q |
| |
|
||||| | ||||| || || || ||||||||| ||||| ||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
6242850 |
taaaacacagtatgttgtgcattatttttactgtttaaaagaaaatatactaatgtttgacaactataaacagattggtgaatgtgctgcacctggctac |
6242949 |
T |
|
| Q |
201 |
aataacatctcatctcagccgccaatcaggaaattgtcacatcaggaatgtgac |
254 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | ||| ||||||| |
|
|
| T |
6242950 |
aataa-----catctcagccgccaatcaggaaattgtcacgttagggatgtgac |
6242998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 6166326 - 6166582
Alignment:
| Q |
1 |
tgagaatggatggcaacaaaagagaacggtttcaggtcacatgtaagcggtctgaaacaccattgtaacttatatcacaaacactgtgtactgttcaaca |
100 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||| ||||| ||| ||||||| ||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
6166326 |
tgagaatggatggcaacaaaagatcatggtttcaggtcacatgtaatcggtcaaaaaaaccattgaaacatatatcacaaacaccgtgcactgttcaaca |
6166425 |
T |
|
| Q |
101 |
taaaagatagtatcttatgaataatttttactatttaagagaaatattactaatgtttgacaagtat-aaacagattggtgaatgtggtgcacctggcta |
199 |
Q |
| |
|
||||| | || | | | | | | ||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
6166426 |
taaaacacagaacactgttca--actattactatttaaaagaaaatttactaatgtttgacaacaattaaacagattggtgaatgtggtgcacctggcta |
6166523 |
T |
|
| Q |
200 |
taataacatctcatctcagccgccaatcaggaaattgtcacatcaggaatgtgactaat |
258 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6166524 |
caataacatctcatatcagctgccaatcaggaaattgtcacatcaggaatgtgactaat |
6166582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 28 - 258
Target Start/End: Complemental strand, 6593925 - 6593697
Alignment:
| Q |
28 |
ggtttcaggtcacatgtaagcggtctgaaacaccattgtaacttatatcacaaacactgtgtactgttcaacataaaagatagtatcttatgaataattt |
127 |
Q |
| |
|
|||||||||||||||||||| |||| | ||||| |||| | | |||||||||||||| || ||||||||| |||||| |||||||||| || || ||| |
|
|
| T |
6593925 |
ggtttcaggtcacatgtaagtggtcaggaacacaattggagcatatatcacaaacaccatgcactgttcaagataaaacatagtatcttgtgcattattg |
6593826 |
T |
|
| Q |
128 |
ttactatttaagagaaatattactaatgtttgacaagtataaacagattggtgaatgtggtgcacctggctataataacatctcatctcagccgccaatc |
227 |
Q |
| |
|
| | |||| | |||||| | || ||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||| || |||| |||| |
|
|
| T |
6593825 |
t-atgatttgacagaaat-tcacaaatctttgacaagtataaacaaattggtgaatgcggtgcacctggctacaataacagctcatcccaaccgctaatc |
6593728 |
T |
|
| Q |
228 |
aggaaattgtcacatcaggaatgtgactaat |
258 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |
|
|
| T |
6593727 |
aggaaattgttacatcaggaatgtgactaat |
6593697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 55 - 237
Target Start/End: Original strand, 6139770 - 6139950
Alignment:
| Q |
55 |
aaacaccattgtaacttatatcacaaacactgtgtactgttcaacataaaagatagtatcttatgaataatttttactatttaagagaaatattactaat |
154 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||| |||| ||||||||||| | |||| | | || | ||||||||||||| ||||| |||||||| |
|
|
| T |
6139770 |
aaacaccattgaaacatatatcacaaacaccgtgcactgatcaacataaaacacagtacact--gcattaattttactatttaaaagaaaatttactaat |
6139867 |
T |
|
| Q |
155 |
gtttgacaagtataaacagattggtgaatgtggtgcacctggctataataacatctcatctcagccgccaatcaggaaattgt |
237 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||| | ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6139868 |
gtttgacaactataaacagattggtgaatgttgtgcacctggaaaaaataacatctcatctcagccgtcaatcaggaaattgt |
6139950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 92 - 253
Target Start/End: Original strand, 6256721 - 6256882
Alignment:
| Q |
92 |
tgttcaacataaaagatagtatcttatgaataatttttactatttaagagaaatattactaatgtttgacaagtataaacagattggtgaatgtggtgca |
191 |
Q |
| |
|
||||||| |||||| | |||| ||||| ||||||||||||||| | || || ||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
6256721 |
tgttcaaaataaaacacagtacgttatgcataatttttactattcgaaaggaaatttactaatgtttgacaactataaacagattggtgaatgttgtgca |
6256820 |
T |
|
| Q |
192 |
cctggctataataacatctcatctcagccgccaatcaggaaattgtcacatcaggaatgtga |
253 |
Q |
| |
|
|||| ||| ||||| |||| |||||||| ||||||||||||||| |||||| ||| |||||| |
|
|
| T |
6256821 |
cctgtctacaataaaatctgatctcagctgccaatcaggaaattatcacataagggatgtga |
6256882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 165 - 253
Target Start/End: Original strand, 6263274 - 6263362
Alignment:
| Q |
165 |
tataaacagattggtgaatgtggtgcacctggctataataacatctcatctcagccgccaatcaggaaattgtcacatcaggaatgtga |
253 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
6263274 |
tataaacagattggtgaatgttgtgcacctggctacaataacatctcatctcagctgccaatcaggaaattgtcacataaggaatgtga |
6263362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 55 - 237
Target Start/End: Complemental strand, 13275951 - 13275769
Alignment:
| Q |
55 |
aaacaccattgtaacttatatcacaaacactgtgtactgttcaacataaaagatagtatcttatgaataatttttactatttaagagaaatattactaat |
154 |
Q |
| |
|
||||||||| | ||| |||||||||||||| || || ||||||||||| | |||| || || || | ||| ||||||||| ||||| |||||||| |
|
|
| T |
13275951 |
aaacaccatagaaacatatatcacaaacaccatgacttgatcaacataaaacacagtacgttgtgcattaatttcactatttaaaagaaaatttactaat |
13275852 |
T |
|
| Q |
155 |
gtttgacaagtataaacagattggtgaatgtggtgcacctggctataataacatctcatctcagccgccaatcaggaaattgt |
237 |
Q |
| |
|
||| ||||| ||||||||||||||||||| | |||||||||| | ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13275851 |
gttcgacaactataaacagattggtgaatatcgtgcacctggaaaaaataacatctcatctcagccgtcaatcaggaaattgt |
13275769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 6914677 - 6914768
Alignment:
| Q |
149 |
actaatgtttgacaagtataaacagattggtgaatgtggtgcacctggctataataacatctcatctcagccgccaatcaggaaattgtcac |
240 |
Q |
| |
|
|||| |||||||| | ||||||||||| |||||||||||||||||| || |||||||||| ||||||||| | ||||| ||||||||||| |
|
|
| T |
6914677 |
actattgtttgactaaaataaacagattattgaatgtggtgcacctggatacaataacatctgatctcagcctcaaatcaagaaattgtcac |
6914768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 6724471 - 6724423
Alignment:
| Q |
210 |
tcatctcagccgccaatcaggaaattgtcacatcaggaatgtgactaat |
258 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6724471 |
tcatcccagccgccaatcaggaaattgttacatcaggaatgtgactaat |
6724423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6851652 - 6851607
Alignment:
| Q |
1 |
tgagaatggatggcaacaaaagagaacggtttcaggtcacatgtaa |
46 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||||||||||| |
|
|
| T |
6851652 |
tgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaa |
6851607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 14084 - 13836
Alignment:
| Q |
1 |
tgagaatggatggcaacaaaagagaacggtttcaggtcacatgtaagcggtctgaaacaccattgtaacttatatcacaaacactgtgtactgttcaaca |
100 |
Q |
| |
|
||||||||||||||||||||| || | |||||||||||||||||||| |||| | ||| |||| | | | || ||||| || ||||||||||| |
|
|
| T |
14084 |
tgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaagtggtcaggaacgccatcggagcgta-------aacaccatgcactgttcaaca |
13992 |
T |
|
| Q |
101 |
taaaagatagtatcttatgaataatttttactatttaagagaaatattactaatgtttgacaagtataaacagattggtgaatgtggtgcacctggctat |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
13991 |
taaaagatagtatctaatgaataatttttactatctaagagaaatat-actaatgtttgacaagtataaacagactgggaaatgtggtgcacctggctac |
13893 |
T |
|
| Q |
201 |
aataacatctcatctcagccgccaatcaggaaattgtcacatcaggaatgtgactaat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13892 |
aataacatctcatctcagccgccaatcaggaaattgtcacatcaggaa-gtgactaat |
13836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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