View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2513_high_20 (Length: 249)
Name: NF2513_high_20
Description: NF2513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2513_high_20 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 25 - 249
Target Start/End: Original strand, 6897029 - 6897253
Alignment:
| Q |
25 |
aaaattcttgtagacagccactgcttctgtttgatgttatgtcgacagatagagcctaaagaatttccttaaaacaccaaatttcactgaaaacaaagta |
124 |
Q |
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| T |
6897029 |
aaaattcttgtagacagccactgcttctgtttgatgttatgtcaacagatagagcctaaagaatttgcttaaaacaacaaatttcactgaaaacaaagta |
6897128 |
T |
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| Q |
125 |
ccatgacattcaannnnnnnnnnnnaataataattttgaccgcttctttctaaaagtaaaaatgttaaactgaaaatcgcagttaaagatcatatcatca |
224 |
Q |
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| T |
6897129 |
ccatgacattcaattttttatttttaataataattttgaccgcttctttctaaaagtaaaaatgttaaactgaaaatcgcagttaaagatcatatcatca |
6897228 |
T |
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| Q |
225 |
ccataggcaagttattctgctcaat |
249 |
Q |
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| T |
6897229 |
ccataggcaagttattctgctcaat |
6897253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 229
Target Start/End: Original strand, 6879574 - 6879701
Alignment:
| Q |
95 |
aaaacaccaaatttcactgaaaacaaagtaccatgacattcaannnnnnnnnnnnaataataattttgaccgcttctttctaaaagtaaaaatgttaaac |
194 |
Q |
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| T |
6879574 |
aaaacaccaaatttcactgataacaaagtgccatgacattcaatttttt-------ataataattttgatcagctctttctaacaataaaaatgtaaaac |
6879666 |
T |
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| Q |
195 |
tgaaaatcgcagttaaagatcatatcatcaccata |
229 |
Q |
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| T |
6879667 |
tgaaaatcacagataaagatcatatcaacaccata |
6879701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 6879442 - 6879508
Alignment:
| Q |
11 |
cagagaacaatgagaaaattcttgtagacagccactgcttctgtttgatgttatgtcgacagataga |
77 |
Q |
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| T |
6879442 |
cagagaaaaatcagaaaattcttctagacagtcactgtttctgtttgatgctatgtcaacagataga |
6879508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 6165726 - 6165771
Alignment:
| Q |
9 |
agcagagaacaatgagaaaattcttgtagacagccactgcttctgt |
54 |
Q |
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| T |
6165726 |
agcagagaaaaatgagaaaattcttgtaggcagccactgtttctgt |
6165771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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