View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2513_high_26 (Length: 227)
Name: NF2513_high_26
Description: NF2513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2513_high_26 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 32610946 - 32610720
Alignment:
| Q |
1 |
tttccttactgacatgaaatgttataaaagtaatggaaaattagttcaaaaagaatgaattcttatggttattcagtttgttatgttccttattagatat |
100 |
Q |
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| T |
32610946 |
tttccttactgacatgaaatgttataaaagtaatggaaaattagttcaaaaagaatgaattcttatggttattcagtttgttatgttccttattagatat |
32610847 |
T |
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| Q |
101 |
gtcaaaaggacaaacacaacacatttatatacatttaatattgattcaaagtttatgatttatgaaggggtgttacatctttgtaagtgttaagaactat |
200 |
Q |
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| T |
32610846 |
gtcaaagggacaaacacaacacatttatatacatttaatattgattcaaagtttatgatttatgaaggggtgttacagctttgtaagtattaagaactat |
32610747 |
T |
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| Q |
201 |
ttaattgtttttaggagtgtgccagct |
227 |
Q |
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| T |
32610746 |
ttaattgtttttaggagagtgccagct |
32610720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 32573929 - 32573835
Alignment:
| Q |
37 |
aaaattagttcaaaaagaatgaattcttatggttattcagtttgttatgttccttattagatatgtcaaaaggacaaacacaacacatttatata |
131 |
Q |
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|||||||||| ||||| |||||||||||||||||| ||| ||||||||||||||||||| |||| |||||| ||| ||||||||||| ||||| |
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| T |
32573929 |
aaaattagtttaaaaataatgaattcttatggttagtcactttgttatgttccttattaagaatgttaaaagggcaagcacaacacattgatata |
32573835 |
T |
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