View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2513_high_4 (Length: 509)
Name: NF2513_high_4
Description: NF2513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2513_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 47822716 - 47822404
Alignment:
| Q |
9 |
attatactttttctccaaaaggtttctcatattattcttccacaaaataaattttgaaatctccatctttatttgaagatatttttgcacttattgtttt |
108 |
Q |
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| T |
47822716 |
attatactttttctccaaaagatttctcatattattcttccacaaaataaattttgaaatctccatttttatttgaagatatttttgcacttattgtttt |
47822617 |
T |
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| Q |
109 |
gaaattgattttcaagactgttggaagtcttgaagggcacaatggtttaggatttgacaccaagttttcatnnnnnnnnnnnnnnnnnnnnnnctttata |
208 |
Q |
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| T |
47822616 |
gaaattgattttgaagactgttggaagtcttgaagggcacaacggtttaggatttgacaccaagttttcataaaataaaaataaaataaaaaactttata |
47822517 |
T |
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| Q |
209 |
ttcatatttcgtttatatattcaatatttaacatactcatggttggatgtgcaactaacaactcataattgaactcgacaaataaactatgatagttaaa |
308 |
Q |
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| T |
47822516 |
ttcatatttcgtttatatattcaatatttaacatactaatggttggatgtgcaactaacaactcataattgaactcgacaaatacactatgatagttaaa |
47822417 |
T |
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| Q |
309 |
agaacacaacaaa |
321 |
Q |
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| T |
47822416 |
agaacacgacaaa |
47822404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 383 - 446
Target Start/End: Complemental strand, 47822334 - 47822271
Alignment:
| Q |
383 |
attatacatattatattgttgaaagattcatttccaaatgtaattcaggttaatatatatgcat |
446 |
Q |
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| T |
47822334 |
attatacatattatatttttgaaagattcatttccaaatgtaattcaggttaatatatatgcat |
47822271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 47822253 - 47822219
Alignment:
| Q |
460 |
tgaacttataataagatgcagaggaggtggtatgt |
494 |
Q |
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| T |
47822253 |
tgaacttataataagatgcagaggaggtggtatgt |
47822219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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