View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2513_high_6 (Length: 443)
Name: NF2513_high_6
Description: NF2513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2513_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Original strand, 12280998 - 12281421
Alignment:
| Q |
16 |
ataacatcctccaccagactacatgatatagcacgtatgacaaagattttctattcaatgaacaactttaacatgatatgtcaattaaaaactgtaaaaa |
115 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12280998 |
ataacatcctccaccagactacatgatatagcatgtatgacaaagattttctattcaatgaacaactttaacatgatatgtcaattaaaaactgtaaaaa |
12281097 |
T |
|
| Q |
116 |
caatatcacaaagttatacaaacaagatgaaaattgaatgaactagataaaataggaggaacacatataaggtttaagacactgcttgttcaaagtagaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12281098 |
caatatcacaaagttatacaaacaagatgaaaattaaatgaactagataaaataggaggaacacatataaggtttaagacattgcttgttcaaagtagaa |
12281197 |
T |
|
| Q |
216 |
caatatcattcatcagctcccaaagctgtccagaaaacgtgacaaaggtaagtatttgttctgttccaagttgcaacctacaaaccttgtccaaatgact |
315 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
12281198 |
caatatcattcatcagctcccaaagctgtcctagaaacgtgacaaaggtaagtatttgttctgttccaagttgcagcctacaaaccttgtccaaatgatt |
12281297 |
T |
|
| Q |
316 |
agaactagttgtagcagtaaattcattacactcttgttgattatttccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcac |
415 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12281298 |
agaactagtcgtagcagtaaattcattacactcctgttgattatttccttcttgcatagtggtttgactcttacctctaatgggttgatactgttgtcat |
12281397 |
T |
|
| Q |
416 |
tcatgacacactggacttttattc |
439 |
Q |
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|||||||||||||||||||||||| |
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| T |
12281398 |
tcatgacacactggacttttattc |
12281421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 431
Target Start/End: Original strand, 36864093 - 36864171
Alignment:
| Q |
353 |
tgattatttccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcactcatgacacactggac |
431 |
Q |
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|||||||||||||||||||| ||||||| ||||||| |||| ||||||||| ||||||||||| |||| |||||||| |
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| T |
36864093 |
tgattatttccttcttgcatggtggttttactcttaactcttatgggttgactttgttgtcactcttgactcactggac |
36864171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 15 - 439
Target Start/End: Original strand, 37835000 - 37835415
Alignment:
| Q |
15 |
aataacatcctccaccagactacatgatatagcacgtatgacaaagattttctattcaatgaacaactttaacatgatatgtcaattaaaaactgtaaaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37835000 |
aataacatcctccaccagactacatgatatagcacgtatgacaaagattttttattcaatgaacaactttaacatgatatgtcaattaaaaactgtaaaa |
37835099 |
T |
|
| Q |
115 |
acaatatcacaaagttatacaaacaagatgaaaattgaatgaactagataaaataggaggaacacatataaggtttaagacactgcttgttcaaagtaga |
214 |
Q |
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| T |
37835100 |
acaatatcacaaagttatacaaacaagatgaaaattgaatgaactagataaaataggaggaacac----------taagacactgcttgttcaaagtaga |
37835189 |
T |
|
| Q |
215 |
acaatatcattcatcagctcccaaagctgtcc-agaaaacgtgacaaaggtaagtatttgttctgttccaagttgcaacctacaaaccttgtccaaatga |
313 |
Q |
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|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37835190 |
acaatatcattcatcagctcccaaagctgtcccagaaaacgtgacaaaggtaagtatttgttctgtttcaagttgcaacctacaaaccttgtccaaatga |
37835289 |
T |
|
| Q |
314 |
ctagaactagttgtagcagtaaattcattacactcttgttgattatttccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37835290 |
ctagaactagttgtagcagtaaattcattacactcttgttgattatttccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtc |
37835389 |
T |
|
| Q |
414 |
actcatgacacactggacttttattc |
439 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
37835390 |
actcatgacacactggacttttattc |
37835415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 298 - 431
Target Start/End: Original strand, 37840896 - 37841029
Alignment:
| Q |
298 |
aaccttgtccaaatgactagaactagttgtagcagtaaattcattacactcttgttgattatttccttcttgcatagtggtttgactcttacctctgatg |
397 |
Q |
| |
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||||||||| |||||||||||| | ||||||| |||| | | || | ||||||||||||| |||||||||||||| ||||||| | |||||| |||||| |
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| T |
37840896 |
aaccttgtctaaatgactagaatttgttgtagtagtagaattatcaaactcttgttgattgtttccttcttgcatggtggttttgcacttaccactgatg |
37840995 |
T |
|
| Q |
398 |
ggttgatactgttgtcactcatgacacactggac |
431 |
Q |
| |
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|||||| |||||||||||| |||| |||||||| |
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| T |
37840996 |
ggttgactctgttgtcactcttgactcactggac |
37841029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 37821328 - 37821401
Alignment:
| Q |
298 |
aaccttgtccaaatgactagaactagttgtagcagtaaattcattacactcttgtt---gattatttccttctt |
368 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| | || ||| ||||||| ||||||||||||||| |
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| T |
37821328 |
aaccttgtctaaatgactagaattagttgtagcagtaaaattatcacaatcttgttgtcgattatttccttctt |
37821401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 37829570 - 37829643
Alignment:
| Q |
298 |
aaccttgtccaaatgactagaactagttgtagcagtaaattcattacactcttgtt---gattatttccttctt |
368 |
Q |
| |
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||||||||| |||||||||||| |||||||||||||||| | || ||| ||||||| ||||||||||||||| |
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| T |
37829570 |
aaccttgtctaaatgactagaattagttgtagcagtaaaattatcacaatcttgttgtcgattatttccttctt |
37829643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 431
Target Start/End: Complemental strand, 35025783 - 35025714
Alignment:
| Q |
362 |
ccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcactcatgacacactggac |
431 |
Q |
| |
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||||||| ||| ||||||| ||||||| |||||||||||||| | ||||||||| ||||||||||||| |
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| T |
35025783 |
ccttcttacatggtggttttactcttaactctgatgggttgactttcttgtcactcttgacacactggac |
35025714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 431
Target Start/End: Original strand, 37848670 - 37848785
Alignment:
| Q |
316 |
agaactagttgtagcagtaaattcattacactcttgttgattatttccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcac |
415 |
Q |
| |
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|||||||| | |||||||| | | || |||| |||||||| ||||||||| |||||| ||| | |||||| || |||||| |||| |||||||||| |
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| T |
37848670 |
agaactagctatagcagtagaattatcacacacttgttgactatttcctttttgcatggtgctactgctcttaactatgatggtttgactctgttgtcac |
37848769 |
T |
|
| Q |
416 |
tcatgacacactggac |
431 |
Q |
| |
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|||||||| ||||||| |
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|
| T |
37848770 |
tcatgacagactggac |
37848785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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