View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2513_low_1 (Length: 696)
Name: NF2513_low_1
Description: NF2513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2513_low_1 |
 | |
|
| [»] scaffold0421 (2 HSPs) |
| | |
|
| [»] scaffold0122 (1 HSPs) |
| | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 18 - 678
Target Start/End: Complemental strand, 39438942 - 39438281
Alignment:
| Q |
18 |
aaaaactctttttaaattgtaaatgttaaatcgtagaaaagtttatgttgttttgatgaacaactctttttagattgtgtgaatattatcatctatttac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39438942 |
aaaaactctttttaaattgtaaatgttaaatcgtagaaaagtttatcttgttttgatgaacaactctttttagattgtgtgaatattatcatctatttac |
39438843 |
T |
|
| Q |
118 |
tacaaattttgttagagcaaattattctcacctcatttgagagaagcttgaactatagttcattcctctcttatgttaaaagatacactctctttctttn |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39438842 |
tacaaattttgttagagcaaattattctcacctcatttgagagaagcttgaactatagttcattcctctcttatgttaaaagatacactccttttcttta |
39438743 |
T |
|
| Q |
218 |
nnnnnngtttgaattacatttccctcctacaaaaacatgtcttgctccaagtccatattataaaaacattgaatttttaataagacttaattgggaaaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
39438742 |
aaaaaagtttgaattacatttccctcctacaaaaacatgtcttgctccaagtccatattataaaaacattgaatttttaataagacttaattggaaaaaa |
39438643 |
T |
|
| Q |
318 |
gggatttactcgagagagataagacctaaaaggtttcacataacatacaagcatgcacaaaaatcaagcnnnnnnnnnngttgtttgtaaatgctttcaa |
417 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39438642 |
gggatttactcgagagatataagacctaaaaggtttcacataacataccagcatgcacaaaaatcaagc-aaaaaaaaagttgtttgtaaatgctttcaa |
39438544 |
T |
|
| Q |
418 |
ctaactcttagtgttatcgccatcaagcgaggcgttgaaacaatcaaataatgagtgataacaaaaaacaatgagagtgattaagagatagggcaattac |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39438543 |
ctaactcttagtgttatcgccatcaagcgagacgttgaaacaatcaaataatgagtgataacaaaaaacaatgagagtgattaagagatagggcaattac |
39438444 |
T |
|
| Q |
518 |
atgtttgaaaattaatcatggtcgaataaattgaacctaaatgccgcannnnnnnaatgagtaaatcaaaggta--nnnnnnnnngacaaatcaaagata |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
39438443 |
atgtttgaaaattaatcatggtcgaataaattgaacctaaatgccgcatttttttaatgagtaaatcaaaggtatttttttttttaacaaatcaaagata |
39438344 |
T |
|
| Q |
616 |
tttttcttgcactaaagcggagattaatcatctcgagatactaagattaatttaagggttcat |
678 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39438343 |
tttttcttgcactaaagcgaagattaatcatctcgagatactaagattaatttaagggttcat |
39438281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 19814228 - 19814114
Alignment:
| Q |
18 |
aaaaactctttttaaattgtaaatgttaaatcgtagaaaagtttatgttgttttgatgaacaactc-tttttagattgtgtgaatattatcatctattta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| || ||| |||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19814228 |
aaaaactctttttaaattgtaaatgttaaatcgtagaaaaacttatcttctttcgatgaagaactcttttttagattgtgtgaatattatcatctattta |
19814129 |
T |
|
| Q |
117 |
ctacaaattttgtta |
131 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
19814128 |
gtataaattttgtta |
19814114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 681
Target Start/End: Complemental strand, 14187720 - 14187043
Alignment:
| Q |
18 |
aaaaactctttttaaattgtaaatgttaaatcgtagaaaagtttatgttgttttgatgaacaactctttttagattgtgtgaatattatcatctatttac |
117 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14187720 |
aaaaactcttattaaattgtaaaagttaaatcgtagaaaagtttatctttttttgatgaacaactctttttagattgtgtgaatattatcatctatttac |
14187621 |
T |
|
| Q |
118 |
tacaaattttgttagagcaaattattctcacctcatttgagagaagcttgaactatagttcattcctctcttatgttaaaagatacactctctttctttn |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| ||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
14187620 |
tacaaattttgttagagaaaattattctcaccttatttaagagaagtttgacctatagttcattcctcttttatgttaaaagatacactccctttcttta |
14187521 |
T |
|
| Q |
218 |
nnnnnngtttgaattacatttccctc--------ctacaaaaacatgtcttgctccaagtccatattataaaaacattgaatttttaataagacttaatt |
309 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14187520 |
aaaaaagtttgaattacatttccctcttattataatacaaaaacatgtcttgctccaagtccatattataaaaacattgaatttttaataagacttaatt |
14187421 |
T |
|
| Q |
310 |
gggaaaaagggatttactcgagagagataagacctaaaaggtttcacataacatacaagcatgcacaaaaatcaagcnnnnnnnnnngttgtttgtaaat |
409 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
14187420 |
gggaaaaaggaatttactcgagatagataagacctaaaaggtttcacataacataccagcacacacaaaaatcaagcaaaaaaaaaagttgtttgtaaat |
14187321 |
T |
|
| Q |
410 |
gctttcaactaactcttagtgttatcgccatcaagcgaggcgttgaaacaatcaaataatgagtgat--aacaaaaaacaatgagagtgattaagagata |
507 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
14187320 |
gctttcaactaactcttagtgctatcgccatcaagtgagacgttgaaacaatcaaataatgagtgataaaaaaaaaaacaatgaaagtgattaagagata |
14187221 |
T |
|
| Q |
508 |
gggcaattacatgtttgaaaattaatcatggtcgaataaattgaacctaaatgccgca--nnnnnnnaatgagtaaatcaaaggta-nnnnnnnnngaca |
604 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||| ||| |
|
|
| T |
14187220 |
ggtcaattacatgtttaaaaattaatcatggtcgaatgaattgaacctaaatgtcacatttttttttaatgagtaaatcaaaggtattttttttttaaca |
14187121 |
T |
|
| Q |
605 |
aatcaaagatatttttcttgcactaaagcggagattaatcatctcgagatactaagattaatttaa-gggttcatctc |
681 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14187120 |
aatcaaagatatttttcttgcactacagcggagattaatcatctcgagatactaagattaatttaaggggttcatctc |
14187043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 28 - 565
Target Start/End: Complemental strand, 7871 - 7341
Alignment:
| Q |
28 |
tttaaattgtaaatgttaaatcgtagaaaagtttatgttgttttgatgaacaactctttttagattgtgtgaatattatcatctatttactacaaatttt |
127 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7871 |
tttaaattgtaaatgttaagtcgtagaaaagtttatcttcttttgatgaacaactctttttagattgtgtgaatattatcatctatttactacaaa-ttt |
7773 |
T |
|
| Q |
128 |
gttagagcaaattattctcacctcatttgagagaagcttgaactatagttcattcctctcttatgttaaaagatacactctctttctttnnnnnnngttt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
7772 |
gttagagcaaattattctcacctcatttaagagaagcttgaattatagttcattcatctcttatgttaaaagatacactccctttctttaaaaaaagttt |
7673 |
T |
|
| Q |
228 |
gaattacatttccctcc--------tacaaaaacatgtcttgctccaagtccatattataaaaacattgaatttttaataagacttaattgggaaaaagg |
319 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
7672 |
gagttacatttccctcctattataatacaaaaacatgtcttgatccaagtccatattataaaaacattgaacttttagtaagacttaattgagaaaaagt |
7573 |
T |
|
| Q |
320 |
gatttactcgagagagataagacctaaaaggtttcacataacatacaagcatgca--caaaaatcaagcnnnnnnnnnngttgtttgtaaatgctttcaa |
417 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||| |||| ||| |||||| || ||||||||| || |||||||| |
|
|
| T |
7572 |
gatttactc----gagatcagacctaaaaggtttcacataacataccagcacgcaagcaaaaaaaaa-----------agttgtttgtgaaagctttcaa |
7488 |
T |
|
| Q |
418 |
ctaactcttagtgttatcgccatcaagcgaggcgttgaaacaatcaaataatgagtgataacaaaaaacaatgagagtgattaagagatagggcaattac |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7487 |
ctaactcttagtgttatcgccatcaagcgaggcgttgaaacaatcaaataatgagtaataa-aaaaaacaatgagagtgattaagagatagggcaattac |
7389 |
T |
|
| Q |
518 |
atgtttgaaaattaatcatggtcgaataaattgaacctaaatgccgca |
565 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7388 |
atgtttgaaaattaatcatggtcgaataaattgaatctaaatgccgca |
7341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 602 - 681
Target Start/End: Complemental strand, 4514 - 4434
Alignment:
| Q |
602 |
acaaatcaaagatatttttcttgcactaaagcggagattaatcatctcgagatactaagattaatttaa-gggttcatctc |
681 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4514 |
acaaatcaaagatatttttcttgctctaaagcggagattaatcatctcgagatactaagattaatttaaggggttcatctc |
4434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 565
Target Start/End: Complemental strand, 30537 - 29987
Alignment:
| Q |
18 |
aaaaactctttttaaattgtaaatgttaaatcgtagaaaagtttatgttgttttgatgaacaactctttttagattgtgtgaatattatcatctatttac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30537 |
aaaaactctttttaaattgtaaatgttaaatcgtataaaagcttatcttcttttgatgaacaactctttttagattgtgtgaatattatcatctatttac |
30438 |
T |
|
| Q |
118 |
tacaaattttgttagagcaaattattctcacctcatttgagagaagcttgaactatagttcattcctctcttatg---ttaaaagatacactctctttct |
214 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| || ||||||||| |||||| |
|
|
| T |
30437 |
tataaattttgttagagcaaattattctcgcctcatttaagagaagcttgaactatagttcattcctctcttatgtttttttcggatacactccctttct |
30338 |
T |
|
| Q |
215 |
ttnnnnnnngtttgaattacatttccctcc--------tacaaaaacatgtcttgctccaagtccatattataaaaacattgaatttttaataagactta |
306 |
Q |
| |
|
|| ||||| |||||||||||||| ||||||||||| ||||||||||||||| |||| || | | |||||||||||||||| |
|
|
| T |
30337 |
ttaaaaaaa-tttgagttacatttccctcctattataatacaaaaacatttcttgctccaagtcc-----ataataagactctctttttaataagactta |
30244 |
T |
|
| Q |
307 |
attgggaaaaagggatttactcgagagagataagacctaaaaggtttcacataacatacaagcatgcacaaaaatcaagcnnnnnnnnnngttgtttgta |
406 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
30243 |
attgggaaaaagggatttactcgagatagataagacctaaaaggtttcacataacataccagcatgcacaaaaatcaa-agaaaaaaaaagttgtttgta |
30145 |
T |
|
| Q |
407 |
aatgctttcaactaactcttagtgttatcgccatcaagcgaggcgttgaaacaatcaaataatgagtgataacaaaaaacaatgagagtgattaagagat |
506 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30144 |
aatgctttcaactaattcttagtgctatcgccatcaagggaggcgttgaaacaatcaaataatgagtgataa-aaaaaacaatgagagtgattaagagat |
30046 |
T |
|
| Q |
507 |
agggcaattacatgtttgaaaattaatcatggtcgaataaattgaacctaaatgccgca |
565 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30045 |
agggaaattgaatgtttgaaaattaatcatgatcgaataaattgaacctaaatgccgca |
29987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 58602 - 58552
Alignment:
| Q |
43 |
ttaaatcgtagaaaagtttatgttgttttgatgaacaactctttttagatt |
93 |
Q |
| |
|
||||||||||| ||||||||| || ||||||||||||||||||||| |||| |
|
|
| T |
58602 |
ttaaatcgtaggaaagtttatcttcttttgatgaacaactcttttttgatt |
58552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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