View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2513_low_10 (Length: 347)
Name: NF2513_low_10
Description: NF2513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2513_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 29122399 - 29122067
Alignment:
| Q |
15 |
ttcaatattatttgtacataagacacagacgcaaatgtcttgaagatggcaacttcacatattctgtcccatatatgggccacaggaacattaacataga |
114 |
Q |
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| T |
29122399 |
ttcaatattatttgtacataagacacagacgcaaatgtcttgaagatggcaacttcacatattctgtcccatatatgggccacaggaacattaacataga |
29122300 |
T |
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| Q |
115 |
tatatcatcacaatgaaacaaagaagaaaagaatgataccaatagttccctcttagaaattctcatactcattggccattgcaaatgttctttctcccac |
214 |
Q |
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| T |
29122299 |
tatatcaccacaatgaaacaaagaagaaaagaatgataccaatagttccctcttagaaattttcatactcattggccattgcaaatgttctttctcccac |
29122200 |
T |
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| Q |
215 |
tcttgcacctttgcatgggtcccaattcatacataatgtacaaagtataaatagccatggatataaattgaggcatatctccttgtagaaacaataaata |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| |
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| T |
29122199 |
tcttgcacctttgcatgggtcccaattcatacataatgtacaaagtataaatagccatgcatataaattgagacatatctccttgtagaaacaacaaata |
29122100 |
T |
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| Q |
315 |
tatacaatatcttcaatttaattcatggcttct |
347 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
29122099 |
tatacaatatcttcaatttaattcatggcttct |
29122067 |
T |
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