View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2513_low_11 (Length: 337)
Name: NF2513_low_11
Description: NF2513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2513_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 45567355 - 45567245
Alignment:
| Q |
1 |
aagtaatagtcgtaaacttttgctatctatcaacaatgtgatatttattttgtgtgatttgattggatcagttgtgaaaagaattacatcgttagtgtat |
100 |
Q |
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| T |
45567355 |
aagtaatagtagtaaacttttgctatctatcaacaatgtgatatttattttgtgtgatttgattggatcagttgtaaaaagaattacatcgttagtgtat |
45567256 |
T |
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| Q |
101 |
acaaatttatc |
111 |
Q |
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| T |
45567255 |
acaaatttatc |
45567245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 177 - 281
Target Start/End: Complemental strand, 45567179 - 45567075
Alignment:
| Q |
177 |
ctttaaattctgaaatccaatgaggcaagtaaaactatatagaataatgttaatatatttttatatctataaaatttcaatatttcaagttcaattcctt |
276 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45567179 |
ctttaaatgctgaaatccaatgaggcaagtaaaactatatagaaaaatgttaatatatttttatatctataaaatttcaatatttcaagttcaattcctt |
45567080 |
T |
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| Q |
277 |
tctgt |
281 |
Q |
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||||| |
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| T |
45567079 |
tctgt |
45567075 |
T |
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