View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2513_low_17 (Length: 289)
Name: NF2513_low_17
Description: NF2513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2513_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 12817224 - 12817003
Alignment:
| Q |
1 |
tcataaaccctaatatctcaaaataacatcaaca---atatgatttta----gtaaacccacatcaacattaaataataatatctaaagtacatcaaaat |
93 |
Q |
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| T |
12817224 |
tcataaaccctaatatctcaaaataacatcaacattaatatgattttaattagtaaacccacatcaacattaaataata---tctaaagtacatcaaaat |
12817128 |
T |
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| Q |
94 |
atatgacaaagtagttatttttcttttaaaatcaattttttatatatgaaaaaacgatcaaaatgattgttgaaaaataactcaaactattgagagaatt |
193 |
Q |
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| T |
12817127 |
atatgacaaagtagttatttttcttttaaaatcaattttttatatattaaaaaacgatcaaaatgattgttgaaaaataactcaaactattgagagaatt |
12817028 |
T |
|
| Q |
194 |
taaaagagtgttaaaacaatccttt |
218 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
12817027 |
taaaagagtgttaaaacaatccttt |
12817003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 16974582 - 16974525
Alignment:
| Q |
220 |
caaaacgagcctttcgattctcaaggtttattagacaatgtgaagcgttattcatttt |
277 |
Q |
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| T |
16974582 |
caaaacgagcctttcgattctcacggtttactagacaatgttaagcgttattcatttt |
16974525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 12817258 - 12817225
Alignment:
| Q |
69 |
aataatatctaaagtacatcaaaatatatgacaa |
102 |
Q |
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| T |
12817258 |
aataatatctaaagtacatcaaaatatatgacaa |
12817225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 23027450 - 23027389
Alignment:
| Q |
216 |
tttccaaaacgagcctttcgattctcaaggtttattagacaatgtgaagcgttattcatttt |
277 |
Q |
| |
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| T |
23027450 |
tttccaaaacgagcctttcgattctcaaggattattagacaatgtgaagcgttattcatttt |
23027389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 10213965 - 10213904
Alignment:
| Q |
216 |
tttccaaaacgagcctttcgattctcaaggtttattagacaatgtgaagcgttattcatttt |
277 |
Q |
| |
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|||||||||||||||||| |||||||| |||||| | |||||||| |||||||||| ||||| |
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|
| T |
10213965 |
tttccaaaacgagccttttgattctcacggtttacttgacaatgttaagcgttatttatttt |
10213904 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 48777834 - 48777773
Alignment:
| Q |
216 |
tttccaaaacgagcctttcgattctcaaggtttattagacaatgtgaagcgttattcatttt |
277 |
Q |
| |
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||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
48777834 |
tttccaaaacgagtcgttcgattctcaaggtttattagacaatgttaagcgttattcatttt |
48777773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 356298 - 356359
Alignment:
| Q |
216 |
tttccaaaacgagcctttcgattctcaaggtttattagacaatgtgaagcgttattcatttt |
277 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| | |||||||| |||||||||||||||| |
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|
| T |
356298 |
tttccaaaacgagcctttcgattctcacggtttacttgacaatgttaagcgttattcatttt |
356359 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 46562294 - 46562237
Alignment:
| Q |
220 |
caaaacgagcctttcgattctcaaggtttattagacaatgtgaagcgttattcatttt |
277 |
Q |
| |
|
||||| ||||||||||||||||| |||||| | |||||||| |||||||||||||||| |
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|
| T |
46562294 |
caaaatgagcctttcgattctcacggtttacttgacaatgttaagcgttattcatttt |
46562237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 12699237 - 12699286
Alignment:
| Q |
216 |
tttccaaaacgagcctttcgattctcaaggtttattagacaatgtgaagc |
265 |
Q |
| |
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||||||||||||||||||||||||||| |||||| |||||||||| |||| |
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| T |
12699237 |
tttccaaaacgagcctttcgattctcacggtttactagacaatgttaagc |
12699286 |
T |
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