View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2513_low_2 (Length: 590)
Name: NF2513_low_2
Description: NF2513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2513_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Complemental strand, 10011758 - 10011197
Alignment:
| Q |
1 |
ttctccatggctcacatatagaccttcagacattgctttcttaccacaattaataatgtaccttggtgtactatatggaaaacatgcagttgatctattt |
100 |
Q |
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| T |
10011758 |
ttctccatggctcacatatagaccttcagacgttgctttcttaccacaattaataat-taccttggtgtactatatggaaaacatgcagctgatctattt |
10011660 |
T |
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| Q |
101 |
cccacgcatgttcacacactaaaccagcatctatcataacnnnnnnnattctagctcttcttcccatgctaactttaggaatcacagtgctctcttccct |
200 |
Q |
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| T |
10011659 |
cccacgcatgttcacacactaaaccagcatctatcataactttttttattctagctcttcttcccatgctaactttaggaatcacagtgctctcttccct |
10011560 |
T |
|
| Q |
201 |
tggttcaacaacacagtatctatccaactcttcaatgccatctgcatagctgcatgttctccgccagaatctttcatcaaccttcatcaacaacgaaatt |
300 |
Q |
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| T |
10011559 |
tggttcaacagcacagtatccatccaactcttcaatgccatctccatagctgcatgttctccgccagaatctttcat----------caacaacgaaatt |
10011470 |
T |
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| Q |
301 |
tacgacatgttttggatcgattcaatgatcaccgaggatttcttattttttctgcaaaagatgaacacccctcattgttgtccaaatccaagctctgtgg |
400 |
Q |
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| T |
10011469 |
tacgacatgttttggatcgattcaatgatcaccgaggatttcttattttttctgcaaaagatgaacacccctctttgttgtccaaatccaagctctgtgg |
10011370 |
T |
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| Q |
401 |
tggtgttctannnnnnnactgatatgaatttgatgtccaactcttctaaatcatttatgtctcccttcgaaaaaggaaagnnnnnnnncgcttttgcttc |
500 |
Q |
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| T |
10011369 |
tggtgttctatttttttactgatatgaatttgatgtccaactcttctaaatcatttatgtctcccttcgaaaaaggaaagaaaaataactcttctgcttc |
10011270 |
T |
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| Q |
501 |
agaaacgagaaagaatatagaacaaaaagataatttttaacgaaannnnnnnatgtccaattctccaaaacag |
573 |
Q |
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| T |
10011269 |
agaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacag |
10011197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 499 - 573
Target Start/End: Complemental strand, 561652 - 561578
Alignment:
| Q |
499 |
tcagaaacgagaaagaatatagaacaaaaagataatttttaacgaaannnnnnnatgtccaattctccaaaacag |
573 |
Q |
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| T |
561652 |
tcagaaacgagaaagaatatagaagaaaaggacaattttgaaggaaaaaatttgatgtccaattctccaaaacag |
561578 |
T |
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