View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2513_low_22 (Length: 252)

Name: NF2513_low_22
Description: NF2513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2513_low_22
NF2513_low_22
[»] chr3 (14 HSPs)
chr3 (3-243)||(6897230-6897470)
chr3 (1-117)||(6879784-6879900)
chr3 (3-99)||(6235326-6235422)
chr3 (3-99)||(6166184-6166280)
chr3 (5-99)||(6242608-6242702)
chr3 (105-171)||(6166083-6166148)
chr3 (165-238)||(6879714-6879786)
chr3 (105-162)||(6242516-6242572)
chr3 (3-84)||(6256523-6256604)
chr3 (105-173)||(6256407-6256475)
chr3 (3-103)||(6263019-6263119)
chr3 (110-158)||(6594110-6594158)
chr3 (105-163)||(6235233-6235290)
chr3 (36-103)||(6724727-6724794)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 3 - 243
Target Start/End: Complemental strand, 6897470 - 6897230
Alignment:
Q  3 agaagtatgtagctgtttattccacttccataaagctcatgcatggtccaattgtaggctcgacatttggatgtgtagacgctgcgacttgttgtgcttg 102  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6897470 agaagtatgtagctgtttattccacttccacaaagctcatgcatggtccaattgtaggctcgacatttggatgtgtagacgctgcgacttgttgtgcttg 6897371  T
Q  103 tgatcttctctttgttattcttgtgactttgtatcccttttttggggtctcattaatattcatgtgactttcatgtgaacaacattaattgtctgttttt 202  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| ||||||||||||||||||||||    
T  6897370 taatcttctctatgttattcttgtgactttgtatcccttttttggggtctcattaatattcatgtggtattcatgtggacaacattaattgtctgttttt 6897271  T
Q  203 tcaatatgtgccaaccgattgagcagaataacttgcctatg 243  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6897270 tcaatatgtgccaaccgattgagcagaataacttgcctatg 6897230  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 6879900 - 6879784
Alignment:
Q  1 ctagaagtatgtagctgtttattccacttccataaagctcatgcatggtccaattgtaggctcgacatttggatgtgtagacgctgcgacttgttgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  6879900 ctagaagtatgtagctgtttattccacttccacaaagctcatgcatggtccaattgtaggctcgtcatttggatgtgtagacactgcgacttgttgtgct 6879801  T
Q  101 tgtgatcttctctttgt 117  Q
    ||| |||||||||||||    
T  6879800 tgtaatcttctctttgt 6879784  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 6235422 - 6235326
Alignment:
Q  3 agaagtatgtagctgtttattccacttccataaagctcatgcatggtccaattgtaggctcgacatttggatgtgtagacgctgcgacttgttgtgc 99  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||| |||||| ||||||||| || |||||||    
T  6235422 agaagtatgtagctgtttattccacttccacaaaactcatgcatggtccaattgtaggctccacatttgaatgtgtcgacgctgcggctagttgtgc 6235326  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 6166280 - 6166184
Alignment:
Q  3 agaagtatgtagctgtttattccacttccataaagctcatgcatggtccaattgtaggctcgacatttggatgtgtagacgctgcgacttgttgtgc 99  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| || |||| | ||||||||||    
T  6166280 agaaatatgtagctgtttattccacttccagaaagctcatgcatggtccaattttaggctccacatttggatgtgtcgatgctgtggcttgttgtgc 6166184  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 6242702 - 6242608
Alignment:
Q  5 aagtatgtagctgtttattccacttccataaagctcatgcatggtccaattgtaggctcgacatttggatgtgtagacgctgcgacttgttgtgc 99  Q
    |||||||| ||||||||||  ||||||| ||||||||||||||||| ||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  6242702 aagtatgttgctgtttattttacttccacaaagctcatgcatggtctaattgtaggctccgcatttggatgtgtcgacgctgcgacttgttgtgc 6242608  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 6166148 - 6166083
Alignment:
Q  105 atcttctctttgttattcttgtgactttgtatcccttttttggggtctcattaatattcatgtgact 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  6166148 atcttctctttgttattcttgtgactttgtatcccttttttggggtctc-ttaatattcttgtgact 6166083  T

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Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 6879786 - 6879714
Alignment:
Q  165 tgtgactttcatgtgaacaacattaattgtctgttttttcaatatgtgccaaccgattgagcagaataacttgc 238  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||| |||||||||||||    
T  6879786 tgtgactttcatgtgaacaccattaattgtctgt-ttttcaatatgtgccaacccattgaccagaataacttgc 6879714  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 6242572 - 6242516
Alignment:
Q  105 atcttctctttgttattcttgtgactttgtatcccttttttggggtctcattaatatt 162  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  6242572 atcttctctttgttattcttgtgactttgtatccctttttcggggtctc-ttaatatt 6242516  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 6256604 - 6256523
Alignment:
Q  3 agaagtatgtagctgtttattccacttccataaagctcatgcatggtccaattgtaggctcgacatttggatgtgtagacgc 84  Q
    ||||| |||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |  ||||||||| ||| |||||    
T  6256604 agaaggatgtcgctgtttgttccacttccacaaagctcatgcatggtccaattgtaggccccgcatttggatatgttgacgc 6256523  T

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Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 6256475 - 6256407
Alignment:
Q  105 atcttctctttgttattcttgtgactttgtatcccttttttggggtctcattaatattcatgtgacttt 173  Q
    |||||||||||||||||||||||| ||||||||||||||| | | |||| ||||||||| |||||||||    
T  6256475 atcttctctttgttattcttgtgattttgtatccctttttcgagttctctttaatattcttgtgacttt 6256407  T

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Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 6263119 - 6263019
Alignment:
Q  3 agaagtatgtagctgtttattccacttccataaagctcatgcatggtccaattgtaggctcgacatttggatgtgtagacgctgcgacttgttgtgcttg 102  Q
    ||||| |||| ||||||| ||||||||||| |||| | |||||||||||| ||| |||| | || ||||||||||| ||||| | ||||||||| |||||    
T  6263119 agaaggatgtggctgtttgttccacttccacaaagttgatgcatggtccagttgcaggccccacgtttggatgtgtggacgcggagacttgttgcgcttg 6263020  T
Q  103 t 103  Q
    |    
T  6263019 t 6263019  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 6594110 - 6594158
Alignment:
Q  110 ctctttgttattcttgtgactttgtatcccttttttggggtctcattaa 158  Q
    ||||||||||||| |||||||||||||||||||||| ||||||| ||||    
T  6594110 ctctttgttattcctgtgactttgtatccctttttttgggtctctttaa 6594158  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 6235290 - 6235233
Alignment:
Q  105 atcttctctttgttattcttgtgactttgtatcccttttttggggtctcattaatattc 163  Q
    ||||||||||| ||||||||||||||||||||  |||||| |||||||| |||||||||    
T  6235290 atcttctctttcttattcttgtgactttgtattgctttttcggggtctc-ttaatattc 6235233  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 6724727 - 6724794
Alignment:
Q  36 agctcatgcatggtccaattgtaggctcgacatttggatgtgtagacgctgcgacttgttgtgcttgt 103  Q
    |||||| | ||||| |||||||| || | ||||||||||||||| ||||||||  |||||||||||||    
T  6724727 agctcaagtatggtgcaattgtatgccccacatttggatgtgtacacgctgcggtttgttgtgcttgt 6724794  T

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