View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2513_low_28 (Length: 235)

Name: NF2513_low_28
Description: NF2513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2513_low_28
NF2513_low_28
[»] chr7 (2 HSPs)
chr7 (79-235)||(30101721-30101877)
chr7 (1-50)||(30101947-30101997)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 79 - 235
Target Start/End: Complemental strand, 30101877 - 30101721
Alignment:
Q  79 aaattcacatttttaataagtataagtaaagtgtgtggagtttaaactccaacatctacatataatatgtatgtccttgctaagttaagctcacagggtg 178  Q
    |||||||||||||||||||| |||||| | |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30101877 aaattcacatttttaataagaataagtgaggtgtgtggagtttaaattctaacatctacatataatatgtatgtccttgctaagttaagctcacagggtg 30101778  T
Q  179 ttacaagtatttattcacatcatttaaaaatacactcaacatatattatttgattca 235  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  30101777 ttacaagtatttatgcatatcatttaaaaatacactcaacatatattatttgattca 30101721  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30101997 - 30101947
Alignment:
Q  1 tataatcggagtattttaatattattttttt-cgagcaagtgtcacaagta 50  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||||||    
T  30101997 tataatcggagtatcttaatatttttttttttcgagcaagtgtcacaagta 30101947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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