View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2513_low_29 (Length: 233)
Name: NF2513_low_29
Description: NF2513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2513_low_29 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 34995986 - 34995765
Alignment:
| Q |
11 |
cataaatcacataggaagcagttatatcagcataactctcttgtaggtaaaagatttcagtcttgtcctcagaagtctatgaatgccaacaaacaaataa |
110 |
Q |
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| T |
34995986 |
cataaatcacataggaagcagttatatcagcataactctcttgcaggtaaaagatttcagtcttgtcctcagaagtctatgaatgccaacaaaaaaataa |
34995887 |
T |
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| Q |
111 |
aagaagcaaaatatatacataa--atgtatatgataagatatgaactgaaaaggaatattggtggtagtaaataaggattgaacttacacttgcgctaag |
208 |
Q |
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| T |
34995886 |
aagaagcaaaatatatacataaatatgtatatgataagatatgaactgaaaaggaatattggtg---gtaaataaggattgaacttacacttgcgctaag |
34995790 |
T |
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| Q |
209 |
caaagaaacacgattctctggatgt |
233 |
Q |
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| T |
34995789 |
caaagaaacacgattctctggatgt |
34995765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 34987427 - 34987370
Alignment:
| Q |
176 |
gtaaataaggattgaacttacacttgcgctaagcaaagaaacacgattctctggatgt |
233 |
Q |
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| T |
34987427 |
gtaaataaggattaaacttacccttgctctaagcaaagaaacacgattctctggatgt |
34987370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 34987721 - 34987638
Alignment:
| Q |
12 |
ataaatcacataggaagcagttatatcagcataactctcttgtaggtaaaagatttcagtcttgtcctcagaagtctatgaatg |
95 |
Q |
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| T |
34987721 |
ataaatcacgtaggaagctgttgtatctttgtaactctcttgtaggtaaaatatttcattcttgtccttggaagtccatgaatg |
34987638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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