View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2513_low_32 (Length: 212)
Name: NF2513_low_32
Description: NF2513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2513_low_32 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 31438278 - 31438097
Alignment:
| Q |
16 |
gagagaggttggtcgcatgatcaatgcagattatccattacttctgcaattatcaacattttttctgctatttggaatgctaggaacttttataggttcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31438278 |
gagagaggttggtcgcatgatcaatgcagattatccattacttctgcaattatcaacattttttctgctatttggaatgctaggaacttttataggttcc |
31438179 |
T |
|
| Q |
116 |
aaaataagaacattcactggagaagtgccatatcccaaattattgcaaatgtttctttatctgcaagcaattctaatctatc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31438178 |
aaaataagaacattcactggagaagtgccatatcccaaattattgcaaatgtttctttatctgcaagcaattataatctatc |
31438097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 191
Target Start/End: Original strand, 189478 - 189590
Alignment:
| Q |
79 |
tctgctatttggaatgctaggaacttttataggttccaaaataagaacattcactggagaagtgccatatcccaaattattgcaaatgtttctttatctg |
178 |
Q |
| |
|
|||||||||||||||||||| || |||||| ||| |||| | ||| ||||| ||| ||||| |||||| ||||| |||| ||||||||||| |||| |
|
|
| T |
189478 |
tctgctatttggaatgctagaaatacttatagattcaaaaacaggaagattcattgggaaagtgtcatatctcaaatcattgttaatgtttctttgtctg |
189577 |
T |
|
| Q |
179 |
caagcaattctaa |
191 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
189578 |
caagtaattctaa |
189590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 191
Target Start/End: Complemental strand, 14627905 - 14627793
Alignment:
| Q |
79 |
tctgctatttggaatgctaggaacttttataggttccaaaataagaacattcactggagaagtgccatatcccaaattattgcaaatgtttctttatctg |
178 |
Q |
| |
|
|||||||||||||||||||| || |||||| ||| |||| | ||| ||||| ||| ||||| |||||| ||||| |||| ||||||||||| |||| |
|
|
| T |
14627905 |
tctgctatttggaatgctagaaatacttatagattcaaaaacaggaagattcattgggaaagtgtcatatctcaaatcattgttaatgtttctttgtctg |
14627806 |
T |
|
| Q |
179 |
caagcaattctaa |
191 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
14627805 |
caagtaattctaa |
14627793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University