View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2513_low_8 (Length: 400)
Name: NF2513_low_8
Description: NF2513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2513_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 200 - 382
Target Start/End: Complemental strand, 9577205 - 9577006
Alignment:
| Q |
200 |
gacaactagaagtaaaattaaagaataaaatggatagaagaaattgaagttgttccacacacataccaacttggccaagg-------------------g |
280 |
Q |
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| T |
9577205 |
gacaactagaagtaaaattaaagaataaaatggatagaagaaattgaagttgttccacacacataccaacttggccaagggagagagagagaggagaggg |
9577106 |
T |
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| Q |
281 |
agacaattcatcacaaatttctctcaattttttctaagtgtcttaacatnnnnnnnnngagaagaatgacaaagtatttatagagaaagagaacaagtat |
380 |
Q |
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| T |
9577105 |
agacaattcaccacaaatttctctcaattttttctaagtgtcttaacat--aaaaaaagagaagaatgacaaagtatttatagagaaagaggataagtat |
9577008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 9577378 - 9577314
Alignment:
| Q |
18 |
atgaacataagaaggggttagaaatttaaaaccttaatataactaaacgtttgaacataacataa |
82 |
Q |
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| T |
9577378 |
atgaacataagaaggggttagaaatttaaaaccttaatataactaaacgtttgaacataacataa |
9577314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 283
Target Start/End: Complemental strand, 9573353 - 9573267
Alignment:
| Q |
200 |
gacaactagaagtaaaattaaaga-ataaaatggatagaagaaattgaagttgtt--ccacacacataccaacttggccaagggaga |
283 |
Q |
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|||||||| ||||| ||| ||||| |||| |||||||||||||||||||||| || | ||||| ||| |||||||||| ||||||| |
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| T |
9573353 |
gacaactaaaagtagaatgaaagagataatatggatagaagaaattgaagttattcgctacacatatatcaacttggccgagggaga |
9573267 |
T |
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