View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2514_high_11 (Length: 238)
Name: NF2514_high_11
Description: NF2514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2514_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 3429654 - 3429463
Alignment:
| Q |
1 |
ctacttctattgctaggcataattcttttttattaaaaa-ttgttacgatatataaacatcatttaaattataagaagatatgcatttatttaatttttt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3429654 |
ctacttctattgctaggcataattcttttttattaaaaaattgttacgatatataaacatcatttaaattataagaagatatgcatttatttaatttttt |
3429555 |
T |
|
| Q |
100 |
ctaaatacatctgtaattcataatactgctaagtattttggaagaattagaagatttcaattaaacatattaattcacggtcgaactccgat |
191 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
3429554 |
ctaaatacatctgtaattcataatactaccgagtattttggaagaattagaagatttgaattaaacatattcattcacggtcgaactccgat |
3429463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University