View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2514_high_13 (Length: 227)
Name: NF2514_high_13
Description: NF2514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2514_high_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 28785619 - 28785839
Alignment:
| Q |
7 |
ggaggctccatcaacagcgagtttcgaaagtccaaaatctgaaaccttggctctcatgtccttgtcaagaagaatattgctgctttttaggtctctatgg |
106 |
Q |
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| T |
28785619 |
ggaggctccatcaacagcgagtttcgaaagtccaaaatctgaaaccttggctctcatgtccttgtcaagaagaatattgctgctttttaggtctctatgg |
28785718 |
T |
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| Q |
107 |
ataactgcagggacacatcctgtgtgaagatactcaatccctgaacaaacacataattcagtcaatacattgtgatctgaagtaagagaaagggtcatta |
206 |
Q |
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| T |
28785719 |
ataactgcagggacacatcctgtgtgaagatactcaatccctgaacaaacacataattcagtcaatacattgtgatctgaagtaagagaaagggtcatta |
28785818 |
T |
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| Q |
207 |
gtatttaatacagtagtctta |
227 |
Q |
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| T |
28785819 |
gtatttaatacagtagtctta |
28785839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 22128782 - 22128929
Alignment:
| Q |
7 |
ggaggctccatcaacagcgagtttcgaaagtccaaaatctgaaaccttggctctcatgtccttgtcaagaagaatattgctgctttttaggtctctatgg |
106 |
Q |
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|||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||||| | |||||||||||||||||||| |||| | |||||||||| |
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| T |
22128782 |
ggagactccatcaacagcaagtttggaaagaccgaaatctgaaaccttggctctcatctgtctgtcaagaagaatattgctggttttcaagtctctatgg |
22128881 |
T |
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| Q |
107 |
ataactgcagggacacatcctgtgtgaagatactcaatccctgaacaa |
154 |
Q |
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| T |
22128882 |
ataactacaggaacacaacctgtatgaaggtattcaattcctggacaa |
22128929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 40534139 - 40533992
Alignment:
| Q |
7 |
ggaggctccatcaacagcgagtttcgaaagtccaaaatctgaaaccttggctctcatgtccttgtcaagaagaatattgctgctttttaggtctctatgg |
106 |
Q |
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|||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||||| | |||||||||||||||||||| |||| | |||||||||| |
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| T |
40534139 |
ggagactccatcaacagcaagtttggaaagaccgaaatctgaaaccttggctctcatctgtctgtcaagaagaatattgctggttttcaagtctctatgg |
40534040 |
T |
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| Q |
107 |
ataactgcagggacacatcctgtgtgaagatactcaatccctgaacaa |
154 |
Q |
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|||||| |||| ||||| ||||| ||||| || ||||| |||| |||| |
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| T |
40534039 |
ataactacaggaacacaacctgtatgaaggtattcaattcctggacaa |
40533992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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