View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2514_high_2 (Length: 451)

Name: NF2514_high_2
Description: NF2514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2514_high_2
NF2514_high_2
[»] chr1 (5 HSPs)
chr1 (212-441)||(35293944-35294173)
chr1 (19-100)||(35294329-35294410)
chr1 (32-94)||(22679518-22679580)
chr1 (19-97)||(14760052-14760130)
chr1 (19-77)||(16706354-16706412)
[»] chr2 (7 HSPs)
chr2 (19-95)||(980920-980995)
chr2 (29-97)||(18509496-18509564)
chr2 (44-96)||(20972426-20972478)
chr2 (20-97)||(16192593-16192670)
chr2 (32-97)||(7328332-7328396)
chr2 (45-77)||(30714141-30714173)
chr2 (45-97)||(39786315-39786367)
[»] chr4 (8 HSPs)
chr4 (19-97)||(33752712-33752790)
chr4 (19-77)||(17430732-17430790)
chr4 (45-98)||(17168382-17168434)
chr4 (45-98)||(17173954-17174006)
chr4 (19-97)||(28687460-28687538)
chr4 (31-76)||(33752322-33752367)
chr4 (19-71)||(17431139-17431191)
chr4 (46-74)||(28687667-28687695)
[»] chr3 (7 HSPs)
chr3 (19-95)||(30430271-30430347)
chr3 (44-97)||(30172070-30172123)
chr3 (31-99)||(4304338-4304406)
chr3 (19-97)||(4304142-4304220)
chr3 (48-93)||(41993184-41993229)
chr3 (19-71)||(2928119-2928171)
chr3 (45-77)||(44094347-44094379)
[»] chr6 (6 HSPs)
chr6 (19-97)||(31298723-31298801)
chr6 (19-97)||(31298903-31298981)
chr6 (32-69)||(14365120-14365157)
chr6 (45-97)||(6190568-6190620)
chr6 (19-99)||(13340440-13340520)
chr6 (19-71)||(34637603-34637655)
[»] chr5 (10 HSPs)
chr5 (32-94)||(22297764-22297826)
chr5 (44-98)||(29673289-29673343)
chr5 (30-95)||(2858411-2858475)
chr5 (44-96)||(2846573-2846625)
chr5 (31-99)||(38298691-38298759)
chr5 (44-95)||(25905959-25906010)
chr5 (31-93)||(13657552-13657614)
chr5 (19-97)||(25906136-25906214)
chr5 (50-99)||(17048064-17048113)
chr5 (47-99)||(33626007-33626059)
[»] chr8 (5 HSPs)
chr8 (19-96)||(31212313-31212390)
chr8 (19-71)||(9861593-9861645)
chr8 (44-94)||(6906477-6906527)
chr8 (44-98)||(14148889-14148942)
chr8 (31-97)||(33892227-33892293)
[»] chr7 (7 HSPs)
chr7 (19-96)||(29635235-29635311)
chr7 (19-96)||(31198476-31198553)
chr7 (32-71)||(23797236-23797275)
chr7 (48-93)||(31172383-31172428)
chr7 (19-71)||(7760776-7760828)
chr7 (31-71)||(20165032-20165072)
chr7 (19-71)||(37081273-37081325)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 212 - 441
Target Start/End: Complemental strand, 35294173 - 35293944
Alignment:
Q  212 gttgctaatgctaatgctagtgctagtaatgaatatagtacattgtattgtagtgacacacactaaaaccagtgaattgagtcgatggctttataaacct 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35294173 gttgctaatgctaatgctagtgctagtaatgaatatagtacattgtattgtagtgacacacactaaaaccagtgaattgagtcgatggctttataaacct 35294074  T
Q  312 acctttctaatgggccagcctctaaactagcatgcatgccaagtcttcctatttccgttatcaagattcattcatccatcaaccgtcaaatctttgtctt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35294073 acctttctaatgggccagcctctaaactagcatgcatgccaagtcttccaatttccgttatcaagattcattcatccatcaaccgtcaaatctttgtctt 35293974  T
Q  412 gtgtcacaaacaacactagatatacctatg 441  Q
    ||||||||||||||||||||||||||||||    
T  35293973 gtgtcacaaacaacactagatatacctatg 35293944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 35294410 - 35294329
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccctttc 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35294410 caaaagcctcagaaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcatttaattatttaaccctttc 35294329  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 22679518 - 22679580
Alignment:
Q  32 aatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaac 94  Q
    |||||||| || ||||||||||||||||||| ||||||||  ||||||||||| |||||||||    
T  22679518 aatattttagagggactaaaatcaaatgttggtatatttagggggatcgtttacttatttaac 22679580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 14760052 - 14760130
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 97  Q
    ||||||||| |  |||||||| |  ||| ||||||||||||||| ||||||||| |||||| |||| ||||||||||||    
T  14760052 caaaagcctaaaaaatattttagggggattaaaatcaaatgttggtatatttaaggggatcatttacttatttaaccct 14760130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 16706412 - 16706354
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaaggga 77  Q
    ||||||||| | ||| ||||| || ||||||||||||||||||| |||||||| |||||    
T  16706412 caaaagcctaaagaaaattttagagggactaaaatcaaatgttggtatatttagaggga 16706354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 980995 - 980920
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaacc 95  Q
    ||||||||| || |||||||| || |||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  980995 caaaagcctaagaaatattttaga-ggactaaaatcaaatgttgatatatttaaagggatcatttacttatttaacc 980920  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 18509564 - 18509496
Alignment:
Q  29 aggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 97  Q
    ||||||||||| || ||||||||||||||||||| ||||||||  |||| | |||||||||||||||||    
T  18509564 aggaatattttagagggactaaaatcaaatgttggtatatttagggggaccatttaattatttaaccct 18509496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 20972426 - 20972478
Alignment:
Q  44 ggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccc 96  Q
    |||||||||||||||||||||||||||||||||| | || | |||||||||||    
T  20972426 ggactaaaatcaaatgttgatatatttaaagggaccattcacttatttaaccc 20972478  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 16192593 - 16192670
Alignment:
Q  20 aaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 97  Q
    |||||||| ||||||||||| |   ||||||||||||||||||||||||||||  |||   |||| ||||||||||||    
T  16192593 aaaagcctaaggaatattttagggagactaaaatcaaatgttgatatatttaagaggactatttacttatttaaccct 16192670  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 7328396 - 7328332
Alignment:
Q  32 aatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 97  Q
    |||||||| || ||||| |||||||||| || |||||||| ||| |||||||| ||||||||||||    
T  7328396 aatattttggagggactgaaatcaaatgatggtatatttatagg-atcgtttacttatttaaccct 7328332  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 30714173 - 30714141
Alignment:
Q  45 gactaaaatcaaatgttgatatatttaaaggga 77  Q
    |||||||||||||||||||||||||||| ||||    
T  30714173 gactaaaatcaaatgttgatatatttaagggga 30714141  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 39786367 - 39786315
Alignment:
Q  45 gactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 97  Q
    |||||||||||||||||| |||||||||  ||||  |||| ||||||||||||    
T  39786367 gactaaaatcaaatgttggtatatttaataggattatttacttatttaaccct 39786315  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 33752712 - 33752790
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 97  Q
    ||||||||| | ||||||||| |   ||||||||||||||||||||||||||||| ||| |||||| ||||||||||||    
T  33752712 caaaagcctaaagaatattttagggagactaaaatcaaatgttgatatatttaaaaggaccgtttacttatttaaccct 33752790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 17430790 - 17430732
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaaggga 77  Q
    ||||||||| ||||||||||| || ||||||||||||||||||| |||||||| |||||    
T  17430790 caaaagcctaaggaatattttagagggactaaaatcaaatgttggtatatttagaggga 17430732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 17168434 - 17168382
Alignment:
Q  45 gactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccctt 98  Q
    ||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||    
T  17168434 gactaaaattaaatattgatatatttaaa-ggatcttttaattatttaaccctt 17168382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 17174006 - 17173954
Alignment:
Q  45 gactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccctt 98  Q
    ||||||||| |||||||||||||||||||  |||| ||||||||||||||||||    
T  17174006 gactaaaattaaatgttgatatatttaaa-cgatcttttaattatttaaccctt 17173954  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 28687538 - 28687460
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 97  Q
    ||||||| | ||||||||||| ||  || |||||| |||||||| ||||||||||||| || ||||  |||||||||||    
T  28687538 caaaagcataaggaatattttagagagattaaaattaaatgttggtatatttaaagggctcatttacatatttaaccct 28687460  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 33752367 - 33752322
Alignment:
Q  31 gaatattttcgatggactaaaatcaaatgttgatatatttaaaggg 76  Q
    ||||||||| |  ||||||||||||||| |||||||||||||||||    
T  33752367 gaatattttagggggactaaaatcaaatattgatatatttaaaggg 33752322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 17431139 - 17431191
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 71  Q
    ||||||||| |  |||||||| |  ||||||||||||||||||||||||||||    
T  17431139 caaaagcctaaaaaatattttagggggactaaaatcaaatgttgatatattta 17431191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 74
Target Start/End: Original strand, 28687667 - 28687695
Alignment:
Q  46 actaaaatcaaatgttgatatatttaaag 74  Q
    |||||||||||||||||||||||||||||    
T  28687667 actaaaatcaaatgttgatatatttaaag 28687695  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 30430347 - 30430271
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaacc 95  Q
    ||||||||| | ||||||||| || | ||||||||||||||||| |||||||| ||||| | |||| ||||||||||    
T  30430347 caaaagcctaaagaatattttagaggaactaaaatcaaatgttggtatatttagagggaccatttacttatttaacc 30430271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 30172123 - 30172070
Alignment:
Q  44 ggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 97  Q
    ||||||||||||||||||||||||||||  |||| | |||| ||||||||||||    
T  30172123 ggactaaaatcaaatgttgatatatttagggggaccatttacttatttaaccct 30172070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 4304338 - 4304406
Alignment:
Q  31 gaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaacccttt 99  Q
    ||||||||| || ||||||||||||||||||| ||||||||  | |||  |||| ||||||||||||||    
T  4304338 gaatattttagagggactaaaatcaaatgttggtatatttagggagattatttacttatttaacccttt 4304406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 4304220 - 4304142
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 97  Q
    ||||||| | || |||||||| |  ||||||||||||||||||| ||||||||| ||||   |||| ||||||||||||    
T  4304220 caaaagcttaagaaatattttaggaggactaaaatcaaatgttggtatatttaaggggacgatttatttatttaaccct 4304142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 41993184 - 41993229
Alignment:
Q  48 taaaatcaaatgttgatatatttaaagggatcgtttaattatttaa 93  Q
    ||||||||||| ||||||||||||| | ||||||||| ||||||||    
T  41993184 taaaatcaaatattgatatatttaatgtgatcgtttacttatttaa 41993229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 2928171 - 2928119
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 71  Q
    ||||||||| ||||| ||||| || |||||| |||||||||||| ||||||||    
T  2928171 caaaagcctaaggaaaattttagagggactagaatcaaatgttggtatattta 2928119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 44094347 - 44094379
Alignment:
Q  45 gactaaaatcaaatgttgatatatttaaaggga 77  Q
    |||||||||||||||||||||||||||| ||||    
T  44094347 gactaaaatcaaatgttgatatatttaagggga 44094379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 31298801 - 31298723
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 97  Q
    ||||||||| || |||||||| || ||| |||||| |||||||| ||| ||||||| |||| |||| ||||||||||||    
T  31298801 caaaagcctaagaaatattttagagggattaaaattaaatgttggtatttttaaagagatcatttacttatttaaccct 31298723  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 31298903 - 31298981
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 97  Q
    ||||||||| | ||||||||| || | ||||||||||||| ||| ||||||||||||||   |||| ||||||||||||    
T  31298903 caaaagcctaaagaatattttagaggaactaaaatcaaatattggtatatttaaagggactatttacttatttaaccct 31298981  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 14365120 - 14365157
Alignment:
Q  32 aatattttcgatggactaaaatcaaatgttgatatatt 69  Q
    |||||||| |||||||||||||||||||||||||||||    
T  14365120 aatattttagatggactaaaatcaaatgttgatatatt 14365157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 6190620 - 6190568
Alignment:
Q  45 gactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 97  Q
    |||||||||||||||||||||||||||  | |||| |||| ||| ||||||||    
T  6190620 gactaaaatcaaatgttgatatatttagggagatcatttacttagttaaccct 6190568  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 13340520 - 13340440
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaacccttt 99  Q
    ||||||||| | |||| ||||  | ||||||||||||||||||| ||||||||| ||||   |||| ||||||||| ||||    
T  13340520 caaaagcctaaagaatgttttatagggactaaaatcaaatgttggtatatttaaggggactatttacttatttaactcttt 13340440  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 34637603 - 34637655
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 71  Q
    ||||| ||||| ||||||||| |  | ||||||||||||||||||||||||||    
T  34637603 caaaaacctcaagaatattttaggggaactaaaatcaaatgttgatatattta 34637655  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 22297826 - 22297764
Alignment:
Q  32 aatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaac 94  Q
    |||||||| || |||||||||||||||||||||||||||| |||||   |||| |||||||||    
T  22297826 aatattttagagggactaaaatcaaatgttgatatatttagagggactatttacttatttaac 22297764  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 29673343 - 29673289
Alignment:
Q  44 ggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccctt 98  Q
    ||||||||||||||||||| ||||||||| |||| | |||| |||||||||||||    
T  29673343 ggactaaaatcaaatgttggtatatttaaggggaccatttacttatttaaccctt 29673289  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 2858475 - 2858411
Alignment:
Q  30 ggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaacc 95  Q
    |||| |||||||| ||||||||||||||||||||||||||||  |||| | |||| ||||||||||    
T  2858475 ggaaaattttcga-ggactaaaatcaaatgttgatatatttagggggaccatttacttatttaacc 2858411  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 2846625 - 2846573
Alignment:
Q  44 ggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccc 96  Q
    ||||||||||||||||||||||||||||  |||| | |||| |||||||||||    
T  2846625 ggactaaaatcaaatgttgatatatttagggggaccatttacttatttaaccc 2846573  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 38298759 - 38298691
Alignment:
Q  31 gaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaacccttt 99  Q
    ||||||||| || ||||| ||||||||| |||||||||||| |  |||| |||| ||||||||||||||    
T  38298759 gaatattttagagggacttaaatcaaatattgatatatttagactgatcatttacttatttaacccttt 38298691  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 25906010 - 25905959
Alignment:
Q  44 ggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaacc 95  Q
    ||||||||||||||||||| ||||| ||| |||||| |||| ||||||||||    
T  25906010 ggactaaaatcaaatgttggtatatataaggggatcatttacttatttaacc 25905959  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 13657614 - 13657552
Alignment:
Q  31 gaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaa 93  Q
    ||||||||| || | ||||||||||||||||  |||||||||||||| | |||| ||||||||    
T  13657614 gaatattttagaggaactaaaatcaaatgtttgtatatttaaagggaccatttatttatttaa 13657552  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 25906136 - 25906214
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 97  Q
    ||||||||| | ||||||||  |  ||||||||||||||||||||||||||||   ||||  |||| ||||||||||||    
T  25906136 caaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggaggattatttacttatttaaccct 25906214  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 17048064 - 17048113
Alignment:
Q  50 aaatcaaatgttgatatatttaaagggatcgtttaattatttaacccttt 99  Q
    ||||||||||||| ||||||||| |||||| || | ||||||||||||||    
T  17048064 aaatcaaatgttggtatatttaaggggatcattcacttatttaacccttt 17048113  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 33626007 - 33626059
Alignment:
Q  47 ctaaaatcaaatgttgatatatttaaagggatcgtttaattatttaacccttt 99  Q
    |||||||||||| ||||||||||||   ||||| |||| ||||||||||||||    
T  33626007 ctaaaatcaaatattgatatatttaggaggatcatttacttatttaacccttt 33626059  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 31212390 - 31212313
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccc 96  Q
    ||||||||| | |||||||||    ||||||||||||||||||||||||||||| ||||   |||| |||||||||||    
T  31212390 caaaagcctaaagaatattttatggggactaaaatcaaatgttgatatatttaaggggactatttacttatttaaccc 31212313  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 9861645 - 9861593
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 71  Q
    ||||||||| | |||||||||  | ||||||||||||||||||||||||||||    
T  9861645 caaaagcctaaagaatattttatagggactaaaatcaaatgttgatatattta 9861593  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 6906477 - 6906527
Alignment:
Q  44 ggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaac 94  Q
    ||||||||||||||||||| ||||||||  |||| |||||| |||||||||    
T  6906477 ggactaaaatcaaatgttggtatatttagggggaccgtttacttatttaac 6906527  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 14148889 - 14148942
Alignment:
Q  44 ggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccctt 98  Q
    ||||||||||||||||||| |||||||||| ||||| |||| |||||||| ||||    
T  14148889 ggactaaaatcaaatgttggtatatttaaa-ggatcatttagttatttaaacctt 14148942  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 33892227 - 33892293
Alignment:
Q  31 gaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccct 97  Q
    |||||||||  | ||||||||||||||||||| |||||||||   ||| ||||| ||||||||||||    
T  33892227 gaatattttaaagggactaaaatcaaatgttggtatatttaagaagattgtttacttatttaaccct 33892293  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 29635311 - 29635235
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccc 96  Q
    |||||| || ||||||||||| |  ||||||||||||||||||||||||||||  |||| | |||| |||||||||||    
T  29635311 caaaagtctaaggaatattttagg-ggactaaaatcaaatgttgatatatttagggggaccatttacttatttaaccc 29635235  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 31198476 - 31198553
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcgtttaattatttaaccc 96  Q
    ||||||||| || |||||||| |  | ||||||||||||||||| ||||||||||||||   |||| |||||||||||    
T  31198476 caaaagcctaagaaatattttaggagaactaaaatcaaatgttggtatatttaaagggactatttacttatttaaccc 31198553  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 23797236 - 23797275
Alignment:
Q  32 aatattttcgatggactaaaatcaaatgttgatatattta 71  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  23797236 aatattttagagggactaaaatcaaatgttgatatattta 23797275  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 31172383 - 31172428
Alignment:
Q  48 taaaatcaaatgttgatatatttaaagggatcgtttaattatttaa 93  Q
    ||||||||||||||  |||||||||||||||| |||| ||||||||    
T  31172383 taaaatcaaatgtttgtatatttaaagggatcatttacttatttaa 31172428  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 7760776 - 7760828
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 71  Q
    ||||||||| || ||||||||  | ||||||||||||||||||| ||||||||    
T  7760776 caaaagcctaagaaatattttatagggactaaaatcaaatgttggtatattta 7760828  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 20165032 - 20165072
Alignment:
Q  31 gaatattttcgatggactaaaatcaaatgttgatatattta 71  Q
    ||||||||| || ||||||||||||||||||| ||||||||    
T  20165032 gaatattttagagggactaaaatcaaatgttggtatattta 20165072  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 37081273 - 37081325
Alignment:
Q  19 caaaagcctcaggaatattttcgatggactaaaatcaaatgttgatatattta 71  Q
    ||||| ||| ||||||||||| |  |||||||||||||| |||||||||||||    
T  37081273 caaaaacctaaggaatatttttgggggactaaaatcaaacgttgatatattta 37081325  T

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