View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2514_high_4 (Length: 369)
Name: NF2514_high_4
Description: NF2514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2514_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 10 - 354
Target Start/End: Original strand, 19856977 - 19857321
Alignment:
| Q |
10 |
catcatcacattattaagtgaaccaaaatgaagaacttttttcacctcaacactacccatatcacccatcaaaaacttaatcctctcaaccattttcaaa |
109 |
Q |
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| T |
19856977 |
catcatcacattattaagtgaaccaaaatgaagaacttttttcacctcaacactacccatatcacccatcaaaaacttaatcctctccaccattttcaaa |
19857076 |
T |
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| Q |
110 |
ccaacctcactcctaaaaccttcaaacccattaatcctcctaggacaaaacaaatgggttgaagaaatcctcctcaaattcctccagtactctccatatg |
209 |
Q |
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| T |
19857077 |
ccaacctcactcctaaaaccttcaaacccattaatcctcctaggacaaaacaaatgggttgaagaaatcctcctcaaattcctccagtactctccatacg |
19857176 |
T |
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| Q |
210 |
gagcaaaccccattgccctatgaaacaaaagctcgtaagctgattctttcactggtctatcaccaaaagcagaactgcaaagaatctctttagcagtttc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19857177 |
gagcaaaccccattgccctatgaaacaaaagctcgtaagctgattctttcactggtctatcaccaaaagcagaactgcaaagaatctctttagcagtttc |
19857276 |
T |
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| Q |
310 |
tggttcacttgaaataatgaaccgggttaaaccaacagaaaaagc |
354 |
Q |
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| T |
19857277 |
tggttcacttgaaataatgaaccgggttaaaccaacagaaaaagc |
19857321 |
T |
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