View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2514_high_5 (Length: 363)
Name: NF2514_high_5
Description: NF2514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2514_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 4705040 - 4704681
Alignment:
| Q |
1 |
cacagacatatatttgaatcttttgttctataggctctattacgccttctatgaaaggtgagacctctcagttgagtaaggccatcgtttagttcactgc |
100 |
Q |
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| T |
4705040 |
cacagacatgtatttgaatcttttgttctataggctctattacgccttctatgaaaggtgagacctctcagttgagaaaggccatcgtttagttcactgc |
4704941 |
T |
|
| Q |
101 |
tttctagaccatcgttaacgtttagtgtgacagttatacaggcagcagagaaggggtttccgcaaaattgatgtacacaattaaagacaacaatatgata |
200 |
Q |
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| T |
4704940 |
tttctagaccatcgttaacgtttagtgtgacagttatacaggcagcagagaaggggtttccgcaaaattgatgtacacaattaaagacaacaatatgata |
4704841 |
T |
|
| Q |
201 |
ctccatcagtttattatgagtgccgtatttgaaatatttttccatctcaatttttccgtctcaaatttttagtcacgttagaatatcaaagcaaatattt |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4704840 |
ctccatcagtttattatgagtgccatatttgaaatatttttccatctcaatttttccgtctcaaatttttagtcactttagaatatcaaagcaaatattt |
4704741 |
T |
|
| Q |
301 |
attatcttttttcaataataccctcatttatataaatagtctgtccacctatgctactcct |
361 |
Q |
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| T |
4704740 |
attatcttttttcaataataccctcatttatataaatagtctgtccacctat-ctactcct |
4704681 |
T |
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