View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2514_low_1 (Length: 937)
Name: NF2514_low_1
Description: NF2514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2514_low_1 |
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| [»] scaffold1113 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 674; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 1 - 698
Target Start/End: Complemental strand, 32684981 - 32684284
Alignment:
| Q |
1 |
cgctgcattcaacaactccaatccagctgctggtttacaggttaattaatattaaagaactcaaattcaacaactccaatccaactgctggtttcttaat |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684981 |
cgctgcattcaacaactccaatccaactgctggtttataggttaattaatattaaagaactcaaattcaacaactccaatccaactgctggtttcttaat |
32684882 |
T |
|
| Q |
101 |
ttctagaatggcgtggcaaaatttttattcaaataatttaagcatttcttttcgaattgatgagttagatctatgaaagcggtatcatccgccaacactt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684881 |
ttctagaatggcgtggcaaaatttttattcaaataatttaagcatttcttttcgaattgatgagttagatctatgaaagcggtatcatccgccaacactt |
32684782 |
T |
|
| Q |
201 |
tagtagtctcagattcttatgattcgaggtttgtgatgtctcaagcaaaaatcatgtttaaggctgaatggaaagtatgaagaaaatcagaatagagaat |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684781 |
tagtagtctcagattcttatgattcgaggtttgtgatgtctcaagcaaaaatcatgtttaaggctgaatggaaagtatgaagaaaatcagaatagagaat |
32684682 |
T |
|
| Q |
301 |
gaacaagaaagaaaatgatcatgttaactagaaaatgatacactgatgcatcttatatagttgtagttttcgtctatgcaatcacgatctagctagtttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684681 |
gaacaagaaagaaaatgatcatgttaactagaaaatgatacactgatgcatcttatatagttgtagttttcgtctatgcaatcacgatctagctagtttt |
32684582 |
T |
|
| Q |
401 |
catcaatcttgagagggaatgttagttacaagctctccaactaagtatactgagatgtaagtttctttgccaactgttttatgatgtaacttgttcagca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684581 |
catcaatcttgagagggaatgttagttacaagctctccaactaagtatactgagatgtaagtttctttgccaactgttttatgatgtaacttgttcagca |
32684482 |
T |
|
| Q |
501 |
agctatatgtcaatttctaaatgcttagttctttcattgaatacaatagatgttatgtaaatgacactttgactatcacaatataacgcaatgaggtctt |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32684481 |
agctatatgtcaatttctaaatgcttagttctttcattgaataatatagatgttatgtaaatgacactttgactatcaaaatataacgcaatgaggtctt |
32684382 |
T |
|
| Q |
601 |
gtgcttcgaagttctttacggtcattgtcaacctcctctttatattcagccttggatttcagcgcacaattcaactgccagatctgctggtttagagg |
698 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32684381 |
gtgcttcgaagttctttacggtcattgtcaacctcctctttatattcagccttggatttcagcgcacaattcagctgccagatctgctggtttagagg |
32684284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 254 - 641
Target Start/End: Original strand, 32559715 - 32560082
Alignment:
| Q |
254 |
atgtttaaggctgaatggaaagtatgaagaaaatcagaatagagaatgaacaagaaagaaaatgatcatgttaactagaaaatgatacactgatgcatct |
353 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32559715 |
atgtttaaggctgaatgaaaagtatgaagaaaatcagaatagagaatgaacaagaaagaa--------------------aatgatacactgatgcatct |
32559794 |
T |
|
| Q |
354 |
tatatagttgtagttttcgtctatgcaatcacgatctagctagttttcatcaatcttgagagggaatgttagttacaagctctccaactaagtatactga |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32559795 |
tatatagttgtagttttcgtctatgcaatcacgatctagctagttttcatcaatcttgagagggaatgttagttacaagctctctaactaagtatactga |
32559894 |
T |
|
| Q |
454 |
gatgtaagtttctttgccaactgttttatgatgtaacttgttcagcaagctatatgtcaatttctaaatgcttagttctttcattgaatacaatagatgt |
553 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32559895 |
gatgtaagtttctttgccaactgttttatgatgtaacttattcagcaagctatatgtcaatttctaaatgcttagttctttcattgaatacaatgcatgt |
32559994 |
T |
|
| Q |
554 |
tatgtaaatgacactttgactatcacaatataacgcaatgaggtcttgtgcttcgaagttctttacggtcattgtcaacctcctcttt |
641 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32559995 |
tatgtaaatgacactttcactatcacaatataacgcaacgaggtcttgtgcttcgaagttctttacggtcattgtcaacctcctcttt |
32560082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 756 - 905
Target Start/End: Complemental strand, 32684226 - 32684077
Alignment:
| Q |
756 |
tagaatcaaaattattgttagagaaaaacttgccttgaatgctaaatcagcatccggctcattcatgcgtctacaatttatcttcgaccaaatttgagat |
855 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684226 |
tagaatcaaaattattgttagagaaaaacttgccttgaatgctaaatcagcatccggctcattcatgcgtctacaatttatcttcgaccaaatttgagat |
32684127 |
T |
|
| Q |
856 |
tcttacaatgatatccacacaccttcatgtcaaattcccctatctctgat |
905 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32684126 |
tcttacaatgatatccacacaccttcatgtcaaatttccctatctctgat |
32684077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 100 - 256
Target Start/End: Original strand, 32559538 - 32559694
Alignment:
| Q |
100 |
tttctagaatggcgtggcaaaatttttattcaaataatttaagcatttcttttcgaattgatgagttagatctatgaaagcggtatcatccgccaacact |
199 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32559538 |
tttctagaatggcgtggcaaaaattttattcaaataatttaagcatttcttttcgaattgatgagttagatctatgaaagcggtatcatccgctaacact |
32559637 |
T |
|
| Q |
200 |
ttagtagtctcagattcttatgattcgaggtttgtgatgtctcaagcaaaaatcatg |
256 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32559638 |
ttagtagtctcggattcttatgattcgaggtttgtgatgtctcaagcaaaaatcatg |
32559694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 604 - 698
Target Start/End: Complemental strand, 32692276 - 32692182
Alignment:
| Q |
604 |
cttcgaagttctttacggtcattgtcaacctcctctttatattcagccttggatttcagcgcacaattcaactgccagatctgctggtttagagg |
698 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
32692276 |
cttcaaagttctttacggtcattgtcaacctcctctttatattcaaccttgcatttcagcacacaattcagctgccagatctgctggtttagagg |
32692182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 32683271 - 32683211
Alignment:
| Q |
1 |
cgctgcattcaacaactccaatccagctgctggtttacaggttaattaatattaaagaactcaaat |
66 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32683271 |
cgctgcattcaacaactccaa-----ctgctggtttataggttaattaatattaaagaactcaaat |
32683211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 33011053 - 33011092
Alignment:
| Q |
27 |
ctgctggtttacaggttaattaatattaaagaactcaaat |
66 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33011053 |
ctgctggtttataggttaattaatattaaagaactcaaat |
33011092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 756 - 790
Target Start/End: Complemental strand, 32692124 - 32692090
Alignment:
| Q |
756 |
tagaatcaaaattattgttagagaaaaacttgcct |
790 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
32692124 |
tagaatcaaaattattgttagagaaaaacttgcct |
32692090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 28711125 - 28711086
Alignment:
| Q |
27 |
ctgctggtttacaggttaattaatattaaagaactcaaat |
66 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
28711125 |
ctgcaggtttagaggttaattaatattaaagaactcaaat |
28711086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 756 - 829
Target Start/End: Original strand, 61 - 134
Alignment:
| Q |
756 |
tagaatcaaaattattgttagagaaaaacttgccttgaatgctaaatcagcatccggctcattcatgcgtctac |
829 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
61 |
tagaatcaaaattattgttagagaaaaacttgcctcgaatgctaaatcagcatccggctcattcacgcgtctac |
134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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