View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2514_low_14 (Length: 249)
Name: NF2514_low_14
Description: NF2514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2514_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 28786106 - 28785868
Alignment:
| Q |
11 |
cacagaaacttggtacagcttctaggttattgtcgagaagaagggaatagtatacttatttatgagttcatgcataatggaactctcaaggaacatcttt |
110 |
Q |
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| T |
28786106 |
cacagaaacttggtacagcttctaggttattgtcgagaagaagggaatagtatacttatttatgagttcatgcataatggaactctcaaggaacatcttt |
28786007 |
T |
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| Q |
111 |
atagtaagcctgcatgatttaaatcaagtagcaataatgagtttccatatgcttaattatgttttcttgtgcctaacttctttcagggccattaacgcgt |
210 |
Q |
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| T |
28786006 |
atagtaagcctgcatgatttaaatcaagtagcaataatgagtttccatatgcttaattatgttttcttgtgcctaacttctttcagggccattaacgcgt |
28785907 |
T |
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| Q |
211 |
ggacaaagtatcaattggattaagcgacttgagattgcc |
249 |
Q |
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| T |
28785906 |
ggacaaagtatcaattggattaagcgactcgagattgcc |
28785868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 22129289 - 22129165
Alignment:
| Q |
11 |
cacagaaacttggtacagcttctaggttattgtcgagaagaagggaatagtatacttatttatgagttcatgcataatggaactctcaaggaacatcttt |
110 |
Q |
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||||||||||||||||| ||| | || ||||| |||||||||| ||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||| |
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| T |
22129289 |
cacagaaacttggtacaacttattgggtattgccgagaagaagagaatagtattcttgtgtatgagttcatgcataatggcactctcaaggaacatcttt |
22129190 |
T |
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| Q |
111 |
atagtaagcctgcatgatttaaatc |
135 |
Q |
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| T |
22129189 |
atggtaagcctgcatgatttaaatc |
22129165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 40533632 - 40533756
Alignment:
| Q |
11 |
cacagaaacttggtacagcttctaggttattgtcgagaagaagggaatagtatacttatttatgagttcatgcataatggaactctcaaggaacatcttt |
110 |
Q |
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||||||||||||||||| ||| | || ||||| |||||||||| ||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||| |
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| T |
40533632 |
cacagaaacttggtacaacttattgggtattgccgagaagaagagaatagtattcttgtgtatgagttcatgcataatggcactctcaaggaacatcttt |
40533731 |
T |
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| Q |
111 |
atagtaagcctgcatgatttaaatc |
135 |
Q |
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|| |||||||||||||||||||||| |
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| T |
40533732 |
atggtaagcctgcatgatttaaatc |
40533756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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